ingest-tests.yaml

name: ingest-tests
on:
  # test
  pull_request:
    paths:
      - "ingest/**"
      - ".github/workflows/ingest-tests.yml"
  push:
    branches:
      - main
  workflow_dispatch:
concurrency:
  group: ci-${{ github.ref == 'refs/heads/main' && github.run_id || github.ref }}-ingest-tests
  cancel-in-progress: true
jobs:
  unitTests:
    name: Unit Tests
    runs-on: codebuild-loculus-ci-${{ github.run_id }}-${{ github.run_attempt }}
    timeout-minutes: 15
    steps:
      - uses: actions/checkout@v4
      - name: Set up micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: ingest/environment.yml
          micromamba-version: 'latest'
          init-shell: >-
            bash powershell
          cache-environment: true
          post-cleanup: 'all'
      - name: Run tests
        run: |
          micromamba activate loculus-ingest
          pytest tests/
        shell: micromamba-shell {0}
        working-directory: ingest