run_tool_shed.sh

#!/bin/sh

cd `dirname $0`

: ${GALAXY_VIRTUAL_ENV:=.venv}

if [ -d "$GALAXY_VIRTUAL_ENV" ];
then
    . "$GALAXY_VIRTUAL_ENV/bin/activate"
fi

./scripts/common_startup.sh

: ${GALAXY_VIRTUAL_ENV:=.venv}

if [ -d "$GALAXY_VIRTUAL_ENV" ];
then
    . "$GALAXY_VIRTUAL_ENV/bin/activate"
fi


tool_shed=`./scripts/tool_shed/bootstrap_tool_shed/parse_run_sh_args.sh $@`
args=$@

if [ $? -eq 0 ] ; then
	bash ./scripts/tool_shed/bootstrap_tool_shed/bootstrap_tool_shed.sh $@
	args=`echo $@ | sed "s#-\?-bootstrap_from_tool_shed $tool_shed##"`
fi

if [ -z "$TOOL_SHED_CONFIG_FILE" ]; then
    if [ -f tool_shed_wsgi.ini ]; then
        TOOL_SHED_CONFIG_FILE=tool_shed_wsgi.ini
    elif [ -f config/tool_shed.ini ]; then
        TOOL_SHED_CONFIG_FILE=config/tool_shed.ini
    else
        TOOL_SHED_CONFIG_FILE=config/tool_shed.ini.sample
    fi
    export TOOL_SHED_CONFIG_FILE
fi

python ./scripts/paster.py serve $TOOL_SHED_CONFIG_FILE --pid-file=tool_shed_webapp.pid --log-file=tool_shed_webapp.log $args