diff --git a/README.md b/README.md index 7fdde8bc..6dad2e58 100644 --- a/README.md +++ b/README.md @@ -483,3 +483,14 @@ docker run -v .:/data --gpus all -it af3 journal = {bioRxiv} } ``` + +```bibtex +@article{Li2024SwitchEA, + title = {Switch EMA: A Free Lunch for Better Flatness and Sharpness}, + author = {Siyuan Li and Zicheng Liu and Juanxi Tian and Ge Wang and Zedong Wang and Weiyang Jin and Di Wu and Cheng Tan and Tao Lin and Yang Liu and Baigui Sun and Stan Z. Li}, + journal = {ArXiv}, + year = {2024}, + volume = {abs/2402.09240}, + url = {https://api.semanticscholar.org/CorpusID:267657558} +} +``` diff --git a/alphafold3_pytorch/trainer.py b/alphafold3_pytorch/trainer.py index 9da038d8..f469f43f 100644 --- a/alphafold3_pytorch/trainer.py +++ b/alphafold3_pytorch/trainer.py @@ -178,6 +178,7 @@ def __init__( use_foreach = True ), ema_on_cpu = False, + ema_update_model_with_ema_every: int | None = None, use_adam_atan2: bool = False, use_lion: bool = False, use_torch_compile: bool = False @@ -220,6 +221,7 @@ def __init__( include_online_model = False, allow_different_devices = True, coerce_dtype = True, + update_model_with_ema_every = ema_update_model_with_ema_every, **ema_kwargs ) diff --git a/pyproject.toml b/pyproject.toml index 8bea0da7..7853fee7 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "alphafold3-pytorch" -version = "0.6.2" +version = "0.6.3" description = "Alphafold 3 - Pytorch" authors = [ { name = "Phil Wang", email = "lucidrains@gmail.com" }, @@ -33,7 +33,7 @@ dependencies = [ "CoLT5-attention>=0.11.0", "einops>=0.8.0", "einx>=0.2.2", - "ema-pytorch>=0.6.4", + "ema-pytorch>=0.7.0", "environs", "lion-pytorch>=0.2.2", "joblib",