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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<link rel="stylesheet" href="style.css" />
<title>Bio Alignment Algorithms</title>
</head>
<body>
<h1>Bioinformatics Alignment Algorithms</h1>
<ul class="algorithms">
<li class="active">Needleman-Wunsch</li>
<li>Smith-Waterman</li>
<li>Dot Plot Matrix With Window</li>
</ul>
<div class="form">
<div class="input-group">
<label for="">Sequence A</label>
<input id="seq-a" type="text" value="ACGTTGACCTGTAACCTC" />
</div>
<div class="input-group">
<label for="">Sequence B</label>
<input id="seq-b" type="text" value="ACCTTGTCCTCTTTGCCC" />
</div>
<div class="needle-smith__inputs">
<div class="input-group">
<label for="">Match</label>
<input id="match" type="number" value="2" />
</div>
<div class="input-group">
<label for="">Mismatch</label>
<input id="mismatch" type="number" value="-1" />
</div>
<div class="input-group">
<label for="">Gap</label>
<input id="gap" type="number" value="-1" />
</div>
</div>
<div class="dot-matrix__inputs">
<div class="input-group">
<label for="">Window size</label>
<input id="w-size" type="number" value="9" min=1 />
</div>
<div class="input-group">
<label for="">Step</label>
<input id="step" type="number" value="3" min=1 />
</div>
<div class="input-group">
<label for="">Threshold</label>
<input id="thresh" type="number" value="4" min=1 />
</div>
</div>
<button id="solve-btn">Solve</button>
</div>
<div class="scroll-container scrollbar">
<table class="matrix"></table>
</div>
<div class="alignments-section">
<h2>Alignments</h2>
</div>
<script src="./algorithms/DotMatrixWindow.js"></script>
<script src="./algorithms/NeedlemanWunsch.js"></script>
<script src="./algorithms/SmithWaterman.js"></script>
<script src="index.js"></script>
</body>
</html>