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lines changed Original file line number Diff line number Diff line change @@ -54,14 +54,14 @@ columns are:
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2 . start position of the accessible region
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3 . end position of the accesssible region
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4 . peak name
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- 5 . peak score. The score is the maximum foldchange (signal/average
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- signal) within the peak. By default, the signal is the total
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- pileup of all types of fragments from short to tri-nuc size
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- fragments.
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- 6 . Not used
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+ 5 . peak score. The score is the 10times the maximum foldchange
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+ (signal/average signal) within the peak. By default, the 'signal'
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+ used to calculate foldchange is the total pileup of all types of
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+ fragments from short to tri-nuc size fragments.
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7 . Not used
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8 . Not used
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- 9 . peak summit position. It's the relative position from the start
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+ 9 . Not used
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+ 10 . peak summit position. It's the relative position from the start
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position to the peak summit which is defined as the position with
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the maximum foldchange score.
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