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Copy pathblOCh__sim.m
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blOCh__sim.m
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function varargout = blOCh__sim(Fun,spc,khr,opt,varargin)
% function [sim,Msg] = blOCh__sim(spc,khr,opt,varargin)
%
% This script simulates an output from blOCh
%
%
%
% Copyright (C) 2017 Mads Sloth Vinding
%
% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program. If not, see <http://www.gnu.org/licenses/>.
%
if isempty(Fun)
warning off
Status = 0;
varargout{1} = -1;
if spc.pTx > 1
valid_sim_Txs = {'all','sep'};
def_sim_Tx = valid_sim_Txs{1};
else
valid_sim_Txs = {'all'};
def_sim_Tx = valid_sim_Txs{1};
end
valid_sim_ks = {'last','all','firstlast'};
def_sim_k = valid_sim_ks{1};
valid_sim_ns = {'last','all'};
def_sim_n = valid_sim_ns{1};
valid_opt_ns = {'opt1','opt2'};
def_opt_n = 'opt1';
valid_sim_Rlxs = [1,0];
def_sim_Rlx = valid_sim_Rlxs(2);
valid_Shows = [1,0];
def_Show = valid_Shows(1);
valid_SaveFigs = [1,0];
def_SaveFig = valid_SaveFigs(1);
valid_Nuc = {'1H','13C','19F'};
def_Nuc = '1H';
def_B1inhom_lim = [1,1];
def_B1inhom_N = 1;
def_B0inhom_lim = [0;0];
def_B0inhom_N = 1;
def_dt = [];
def_u = [];
def_v = [];
def_g = [];
p = inputParser;
try p.addRequired('Fun', @(x)isstruct(x)||isempty(x));
try p.addRequired('spc', @(x)isstruct(x));
try p.addRequired('khr', @(x)isstruct(x)||isempty(x));
try p.addRequired('opt', @(x)isstruct(x)||isempty(x));
try p.addParamValue('opt_n',def_opt_n,@(x)any(strcmpi(x,valid_opt_ns)));
try p.addParamValue('sim_Rlx',def_sim_Rlx,@(x)any(valid_sim_Rlxs));
try p.addParamValue('sim_Tx',def_sim_Tx,@(x)any(strcmpi(x,valid_sim_Txs)));
try p.addParamValue('sim_k',def_sim_k,@(x)Validate_ks(x));
try p.addParamValue('sim_n',def_sim_n,@(x)any(strcmpi(x,valid_sim_ns))); % ||validateattributes(x,{'numeric'},{'size',[1,1],'real','integer','>=',1,'<=',opt.N})
try p.addParamValue('Show',def_Show,@(x)any(valid_Shows));
try p.addParamValue('B1inhom_lim',def_B1inhom_lim,@(x)validateattributes(x,{'numeric'},{'size',[1,2],'real','>=',0,'<=',2}));
try p.addParamValue('B1inhom_N',def_B1inhom_N,@(x)validateattributes(x,{'numeric'},{'size',[1,1],'real','>=',1,'real','finite'}));
try p.addParamValue('B0inhom_lim',def_B0inhom_lim,@(x)validateattributes(x,{'numeric'},{'size',[1,2],'real','finite'}));
try p.addParamValue('B0inhom_N',def_B0inhom_N,@(x)validateattributes(x,{'numeric'},{'size',[1,1],'real','>=',1,'real','finite'}));
try p.addParamValue('dt',def_dt,@(x)validateattributes(x,{'numeric'},{'size',[NaN,NaN],'real','finite','>',0}));
try p.addParamValue('u',def_u,@(x)validateattributes(x,{'numeric'},{'size',[NaN,NaN,NaN],'real','finite'}));
try p.addParamValue('v',def_v,@(x)validateattributes(x,{'numeric'},{'size',[NaN,NaN,NaN],'real','finite'}));
try p.addParamValue('g',def_g,@(x)validateattributes(x,{'numeric'},{'size',[NaN,NaN,NaN],'real','finite'}));
try p.addParamValue('Nuc',def_Nuc,@(x)any(strcmpi(x,valid_Nuc)));
try p.addParamValue('SaveFig',def_SaveFig,@(x)any(valid_SaveFigs));
Status = 1;
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__4_0__sim: ',me.message,' B0inhom_N: Resolution to simulate B0 inhomogeneity in'],2);end
catch me;Display_Message(['blOCh__4_0__sim: ',me.message,' B0inhom_lim: should be a [a,b] array of units Hz like [-200,200] to simulate RF inhomogeneity from -200 Hz to 200 Hz'],2);end
catch me;Display_Message(['blOCh__4_0__sim: ',me.message,' B1inhom_N: Resolution to simulate RF inhomogeneity in'],2);end
catch me;Display_Message(['blOCh__4_0__sim: ',me.message,' B1inhom_lim: should be a [a,b] array like [0.9,1.1] to simulate RF inhomogeneity of 90% to 110%'],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message,' sim_n: the time frame(s) the simulation stores; ''last'', ''all'', or # (number of dt between frames)'],2); end
catch me;Display_Message(['blOCh__sim: ',me.message,' sim_k: the iteration(s) the simulation does; ''last'', ''all'', ''firstlast'', or # (a specific iteration)'],2); end
catch me;Display_Message(['blOCh__sim: ',me.message,' sim_Tx:'],2);end
catch me;Display_Message(['blOCh__sim: ',me.message,' sim_Rlx:'],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
catch me;Display_Message(['blOCh__sim: ',me.message],2);end
if Status
try
p.parse(Fun,spc,khr,opt,varargin{:})
sim.sim_n = p.Results.sim_n;
sim.opt_n = p.Results.opt_n;
sim.sim_Tx = p.Results.sim_Tx;
sim.sim_k = p.Results.sim_k;
sim.sim_Rlx = p.Results.sim_Rlx;
sim.Show = p.Results.Show;
sim.SaveFig = p.Results.SaveFig;
sim.B1inhom_lim = p.Results.B1inhom_lim;
sim.B1inhom_N = p.Results.B1inhom_N;
sim.B0inhom_lim = p.Results.B0inhom_lim;
sim.B0inhom_N = p.Results.B0inhom_N;
sim.temp.u = p.Results.u;
sim.temp.v = p.Results.v;
sim.temp.g = p.Results.g;
sim.temp.dt = p.Results.dt;
sim.temp.Nuc = p.Results.Nuc;
switch sim.sim_Tx
case 'all'
sim.S = 1;
sim.s = 1;
case 'sep'
sim.S = spc.pTx+1;
sim.s = [1:sim.S];
end
catch me
Display_Message(['blOCh__sim: ',me.message],2)
end
if ~isempty(opt) && ~isempty(khr)
if isdef(varargin,'g')
Display_Message(sprintf('blOCh__sim: both khr and g were specified. g will be ignored'),1);
end
if isdef(varargin,'u') || isdef(varargin,'v')
Display_Message(sprintf('blOCh__sim: both opt and u or v were specified. u,v will be ignored'),1);
end
if isdef(varargin,'dt')
Display_Message(sprintf('blOCh__sim: both opt and dt were specified. dt will be ignored'),1);
end
if isdef(varargin,'Nuc')
Display_Message(sprintf('blOCh__sim: both khr and Nuc were specified. Nuc will be ignored'),1);
end
if strcmp(sim.opt_n,'opt1')
sim.uo = opt.opt1.uo;
sim.vo = opt.opt1.vo;
if ~isfield(opt.opt1,'ksafe')
Kact = 1;
else
Kact = opt.opt1.ksafe;
end
sim.MaxIter = opt.opt1.MaxIter;
sim.mon = opt.opt1.mon;
sim.g = opt.opt1.g;
sim.OptNum = 1;
elseif strcmp(sim.opt_n,'opt2')
sim.uo = opt.opt2.uo;
sim.vo = opt.opt2.vo;
if ~isfield(opt.opt2,'ksafe')
Kact = 1;
else
Kact = opt.opt2.ksafe;
end
sim.MaxIter = opt.opt2.MaxIter;
sim.mon = opt.opt2.mon;
sim.g = opt.opt2.g;
sim.OptNum = 2;
end
sim.Kact = Kact;
sim.dt = opt.dt;
sim.gamma = khr.gamma;
Nact = opt.N;
elseif isempty(opt) && ~isempty(khr)
if isdef(varargin,'g')
Display_Message(sprintf('blOCh__sim: both khr and g were specified. g will be ignored'),1);
end
if isdef(varargin,'u') && isdef(varargin,'v')
% Display_Message(sprintf('blOCh__sim: both u and v were specified. '),1);
elseif isdef(varargin,'u') && ~isdef(varargin,'v')
Display_Message(sprintf('blOCh__sim: only u was specified. Aborting '),2);
return
elseif ~isdef(varargin,'u') && isdef(varargin,'v')
Display_Message(sprintf('blOCh__sim: only v was specified. Aborting '),2);
return
end
if isdef(varargin,'dt')
Display_Message(sprintf('blOCh__sim: dt was specified.'),1);
end
if isdef(varargin,'Nuc')
Display_Message(sprintf('blOCh__sim: both khr and Nuc were specified. Nuc will be ignored'),1);
end
% sim.dt = sim.temp.dt; % bug 170309
sim.dt = khr.dt;
sim.uo = sim.temp.u;
sim.vo = sim.temp.v;
sim.Nuc = khr.Nuc;
sim.gamma = khr.gamma;
Nact = size(sim.uo,2);
Kact = size(sim.uo,3);
sim.Kact = Kact;
sim.MaxIter = Kact-1;
sim.N = Nact;
sim.OptNum = 1;
sim.Mask = 0;
sim = blOCh__opt('Prepare_khr_4_opt',[],[],[],[],sim,khr);
elseif isempty(opt) && isempty(khr)
if isdef(varargin,'g')
Display_Message(sprintf('blOCh__sim: g was specified.'),1);
else
Display_Message(sprintf('blOCh__sim: g needs to be specified. Aborting '),2);
return
end
if isdef(varargin,'u') && isdef(varargin,'v')
% Display_Message(sprintf('blOCh__sim: both u and v were specified. '),1);
elseif isdef(varargin,'u') && ~isdef(varargin,'v')
Display_Message(sprintf('blOCh__sim: only u was specified. Aborting '),2);
return
elseif ~isdef(varargin,'u') && isdef(varargin,'v')
Display_Message(sprintf('blOCh__sim: only v was specified. Aborting '),2);
return
end
if isdef(varargin,'dt')
Display_Message(sprintf('blOCh__sim: dt was specified.'),1);
else
Display_Message(sprintf('blOCh__sim: dt needs to be specified. Aborting '),2);
return
end
if isdef(varargin,'Nuc')
Display_Message(sprintf('blOCh__sim: Nuc was specified. '),1);
else
Display_Message(sprintf('blOCh__sim: Nuc wasn''t specified. Assuming it''s 1H'),1);
end
sim.dt = sim.temp.dt;
sim.g = sim.temp.g;
sim.uo = sim.temp.u;
sim.vo = sim.temp.v;
sim.Nuc = sim.temp.Nuc;
Nact = size(sim.uo,2);
Kact = size(sim.uo,3);
sim.Kact = Kact;
sim.MaxIter = 1;
sim.OptNum = 1;
sim.mon = true(1,Nact);
% khr.Nuc = sim.Nuc;
switch sim.Nuc
case '1H'
sim.gamma = 2.6751289e8;
case '13C'
sim.gamma = 67.262e6;
case '19F'
sim.gamma = 251.662e6;
end
khr.gamma = sim.gamma;
khr.GmHW = 1;
khr.Gmpct = 1;
khr.SmHW = 1;
khr.Smpct = 1;
end
switch sim.sim_n
case 'last'
sim.M = 1;
sim.N = Nact;
case 'all'
sim.M = Nact+1;
sim.N = Nact;
end
switch sim.sim_k
case 'last'
sim.K = 1;
sim.k = Kact;
case 'all'
sim.K = Kact;
sim.k = [1:Kact];
case 'firstlast'
sim.K = 2;
sim.k = [1,Kact];
otherwise
sim.K = 1;
sim.k = sim.sim_k;
end
if sim.sim_Rlx == 1
sim.Rlx = 1;
else
sim.Rlx = 0;
end
sim.M_t_big = zeros(3*spc.P,sim.M,sim.K,sim.S,sim.B1inhom_N,sim.B0inhom_N);
if exist('blOCh__Get_Relaxors','file') && sim.sim_Rlx == 1
[sim.FRlxT1,sim.FRlxT2,sim.CRlxT1] = blOCh__Get_Relaxors(spc.T1map,spc.T2map,sim.dt,spc.P);
end
for b0i = 1:sim.B0inhom_N
sim.B0inhom_offsets = linspace(sim.B0inhom_lim(1),sim.B0inhom_lim(2),sim.B0inhom_N);
sim.B0inhom_offset = sim.B0inhom_offsets(b0i);
for rfi = 1:sim.B1inhom_N
sim.B1inhom_scales = linspace(sim.B1inhom_lim(1),sim.B1inhom_lim(2),sim.B1inhom_N);
sim.B1inhom_scale = sim.B1inhom_scales(rfi);
k_counter = 1;
for k = sim.k
if size(sim.g,3)>1
g = sim.g(:,:,k);
else
g = sim.g;
end
for s = sim.s
switch sim.sim_Tx
case 'all'
sim.u = sim.uo(:,:,k);
sim.v = sim.vo(:,:,k);
case 'sep'
if s == sim.S
sim.u = sim.uo(:,:,k);
sim.v = sim.vo(:,:,k);
else
sim.u = zeros(size(sim.uo,1),size(sim.uo,2));
sim.v = zeros(size(sim.vo,1),size(sim.vo,2));
sim.u(s,:) = sim.uo(s,:,k);
sim.v(s,:) = sim.vo(s,:,k);
end
end
sim = blOCh__opt('Allocate_Variables',[],[],[],[],spc,khr,sim);
sim = rmfield(sim,'L_t');
sim = rmfield(sim,'Durations');
sim = rmfield(sim,'Fun');
sim = rmfield(sim,'Eff');
sim = rmfield(sim,'Pen');
sim = rmfield(sim,'dFun');
% sim = rmfield(sim,'MaxIter');
if exist('blOCh__Rotate_Relax','file') && sim.sim_Rlx == 1
for n = 1:sim.N
[R11f,R12f,R13f,R21f,R22f,R23f,R31f,R32f,R33f] = blOCh__opt('Get_Rotator',[],[],[],[],sim.u.*sim.B1inhom_scale,sim.v.*sim.B1inhom_scale,g,sim.w0+2*pi*sim.B0inhom_offset,sim.yx,sim.yy,sim.yz,spc.pTx,sim.sr,sim.si,sim.dt,n);
sim.M_t(:,n+1) = blOCh__Rotate_Relax(sim.M_t(:,n),R11f,R12f,R13f,R21f,R22f,R23f,R31f,R32f,R33f,sim.FRlxT1,sim.FRlxT2,sim.CRlxT1,'Forward');
end
else
for n = 1:sim.N
[R11f,R12f,R13f,R21f,R22f,R23f,R31f,R32f,R33f] = blOCh__opt('Get_Rotator',[],[],[],[],sim.u.*sim.B1inhom_scale,sim.v.*sim.B1inhom_scale,g,sim.w0+2*pi*sim.B0inhom_offset,sim.yx,sim.yy,sim.yz,spc.pTx,sim.sr,sim.si,sim.dt,n);
sim.M_t(:,n+1) = blOCh__opt('Rotate',[],[],[],[],sim.M_t(:,n),R11f,R12f,R13f,R21f,R22f,R23f,R31f,R32f,R33f,'Forward');
end
end
sim.idxtot = spc.idxtot;
switch sim.sim_n
case 'last'
sim.M_t_big(:,1,k_counter,s,rfi,b0i) = sim.M_t(:,end);
case 'all'
sim.M_t_big(:,:,k_counter,s,rfi,b0i) = sim.M_t;
end
end
k_counter = k_counter + 1;
end
end
end
sim.M_t = sim.M_t_big;
sim = rmfield(sim,'M_t_big');
% size(sim.M_t_big)
sim.Dim = spc.Dim;
sim.pTx = spc.pTx;
sim.R = spc.R;
sim.Rv = spc.Rv;
sim.D = spc.D;
sim.Dv = spc.Dv;
sim.Md = spc.Md;
sim.idxtot=spc.idxtot;
if sim.Show > 0
sim.fig = Show_Sim(sim);
end
varargout{1} = sim;
end
else
Nargout = nargout;
fun = str2func(Fun);
test = version('-release');
if strcmp(test,'2015a')
v = [];
else
v = {};
end
switch Nargout
case 0
fun(varargin{:});
case 1
v{1} = fun(varargin{:});
case 2
[v{1},v{2}] = fun(varargin{:});
case 3
[v{1},v{2},v{3}] = fun(varargin{:});
case 4
[v{1},v{2},v{3},v{4}] = fun(varargin{:});
case 5
[v{1},v{2},v{3},v{4},v{5}] = fun(varargin{:});
case 6
[v{1},v{2},v{3},v{4},v{5},v{6}] = fun(varargin{:});
case 7
[v{1},v{2},v{3},v{4},v{5},v{6},v{7}] = fun(varargin{:});
case 8
[v{1},v{2},v{3},v{4},v{5},v{6},v{7},v{8}] = fun(varargin{:});
case 9
[v{1},v{2},v{3},v{4},v{5},v{6},v{7},v{8},v{9}] = fun(varargin{:});
case 10
[v{1},v{2},v{3},v{4},v{5},v{6},v{7},v{8},v{9},v{10}] = fun(varargin{:});
otherwise
Display_Message(['spc: Fun: This switch needs to be expanded'],2)
end
varargout = v;
end
end
function test = Validate_rf(x,spc,khr,RFinputtype)
test = false;
if isempty(x) && RFinputtype == 1
test = true;
elseif ~isempty(x) && RFinputtype == 2
end
end
function Out = isdef(In,Case)
Out = false;
for n = 1:length(In)
if ischar(In{n})
if strcmp(In{n},Case)
Out = true;
end
end
end
end
function test = Validate_ks(x)
test = false;
if ischar(x)
switch x
case {'last','all','firstlast'}
test = true;
otherwise
end
elseif isnumeric(x)
test = true;
end
end
function Display_Message(Msg,Type)
if nargin == 1
Type = 0;
end
if iscell(Msg)
for n = 1:length(Msg)
Msg_temp = Msg{n};
Msg_temp = Repair_Msg(Msg_temp);
if Type == 1
fprintf(1,[Msg_temp,'\n']);
elseif Type == 2
fprintf(2,[Msg_temp,'\n']);
elseif Type == 3
fprintf(1,[Msg_temp]);
else
fprintf(Type,[Msg,'\n']);
end
end
else
Msg_temp = Msg;
Msg_temp = Repair_Msg(Msg_temp);
if Type == 1
fprintf(1,[Msg_temp,'\n']);
elseif Type == 2
fprintf(2,[Msg_temp,'\n']);
elseif Type == 0
elseif Type == 3
fprintf(1,[Msg]);
else
fprintf(1,[Msg,'\n']);
end
end
end
function Msg = Repair_Msg(Msg)
% function Msg = Repair_Msg(Msg)
Msg = regexprep(Msg,'\\','msv8');
Msg = regexprep(Msg,'msv8','\\\');
end
function fig = Show_Sim(varargin)
global hsim
hsim.sim = varargin{1};
hsim.fig = figure('Visible','on','Name','blOCh Simulation');
mp = get(0, 'MonitorPositions');
if size(mp,1) > 1
mp = mp(1,:);
end
set(hsim.fig,'Units','pixels')
set(hsim.fig,'Position',[1,1,mp(3).*0.9,mp(4).*0.9])
WHratio = get(hsim.fig,'Position');
WHratio = WHratio(3)/WHratio(4);
set(hsim.fig,'Units','normalized')
%%
[hsim.colmap.Jet,hsim.colmap.Gray] = GetColormaps;
%%
clear varargin
%%
hsim.axes_Magn = axes('Parent',hsim.fig,'Visible','on');
hsim.axes_Colorbar = axes('Parent',hsim.fig,'Visible','on');
hsim.axes_Pulse = axes('Parent',hsim.fig,'Visible','on');
hsim.edit_B0= uicontrol('Style','edit','Callback',@edit_B0_Callback);
hsim.listbox1= uicontrol('Style','listbox','Callback',@listbox1_Callback);
hsim.slider_n= uicontrol('Style','slider','Callback',@slider_n_Callback);
hsim.slider_Sl= uicontrol('Style','slider','Callback',@slider_Sl_Callback);
hsim.slider_Tx= uicontrol('Style','slider','Callback',@slider_Tx_Callback);
hsim.slider_freq= uicontrol('Style','slider','Callback',@slider_freq_Callback);
hsim.slider_k= uicontrol('Style','slider','Callback',@slider_k_Callback);
hsim.slider_B1= uicontrol('Style','slider','Callback',@slider_B1_Callback);
hsim.slider_B0= uicontrol('Style','slider','Callback',@slider_B0_Callback);
hsim.popupmenu_Magn= uicontrol('Style','popupmenu','Callback',@popupmenu_Magn_Callback);
hsim.popupmenu_MagnUnits= uicontrol('Style','popupmenu','Callback',@popupmenu_MagnUnits_Callback);
hsim.popupmenu_Pulse= uicontrol('Style','popupmenu','Callback',@popupmenu_Pulse_Callback);
hsim.popupmenu_PulseUnits= uicontrol('Style','popupmenu','Callback',@popupmenu_PulseUnits_Callback);
hsim.pushbutton_playx1= uicontrol('Style','pushbutton','Callback',@pushbutton_playx1_Callback);
hsim.pushbutton_playx10= uicontrol('Style','pushbutton','Callback',@pushbutton_playx10_Callback);
hsim.pushbutton_playx100= uicontrol('Style','pushbutton','Callback',@pushbutton_playx100_Callback);
hsim.text_Mn= uicontrol('Style','text');
hsim.text_Mx= uicontrol('Style','text');
hsim.text_n= uicontrol('Style','text');
hsim.text_Sl= uicontrol('Style','text');
hsim.text_Tx= uicontrol('Style','text');
hsim.text_freq= uicontrol('Style','text');
hsim.text_k= uicontrol('Style','text');
hsim.text_B1= uicontrol('Style','text');
hsim.text_B0= uicontrol('Style','text');
Sliderheight = 0.02;
Textheight = 0.02;
Textwidth = 0.04;
Spacer = 0.001;
set(hsim.slider_n,'Units','normalized')
set(hsim.slider_Sl,'Units','normalized')
set(hsim.slider_Tx,'Units','normalized')
set(hsim.slider_freq,'Units','normalized')
set(hsim.slider_k,'Units','normalized')
set(hsim.slider_B1,'Units','normalized')
set(hsim.slider_B0,'Units','normalized')
set(hsim.pushbutton_playx1,'Units','normalized')
set(hsim.pushbutton_playx10,'Units','normalized')
set(hsim.pushbutton_playx100,'Units','normalized')
set(hsim.text_Mn,'Units','normalized')
set(hsim.text_Mx,'Units','normalized')
set(hsim.text_n,'Units','normalized')
set(hsim.text_Sl,'Units','normalized')
set(hsim.text_Tx,'Units','normalized')
set(hsim.text_freq,'Units','normalized')
set(hsim.text_k,'Units','normalized')
set(hsim.text_B1,'Units','normalized')
set(hsim.text_B0,'Units','normalized')
set(hsim.axes_Magn,'Units','normalized')
set(hsim.axes_Colorbar,'Units','normalized')
set(hsim.axes_Pulse,'Units','normalized')
set(hsim.listbox1,'Units','normalized')
% set(hsim.listboxPulse,'Units','normalized')
set(hsim.popupmenu_Magn,'Units','normalized')
set(hsim.popupmenu_MagnUnits,'Units','normalized')
set(hsim.popupmenu_Pulse,'Units','normalized')
set(hsim.popupmenu_PulseUnits,'Units','normalized')
set(hsim.edit_B0,'Units','normalized')
%%
hsim.r.x_slider_n = 0.69;
hsim.r.x_slider_Sl = 0.69;
hsim.r.x_slider_Tx = 0.69;
hsim.r.x_slider_freq = 0.69;
hsim.r.x_slider_k = 0.69;
hsim.r.x_slider_B1 = 0.69;
hsim.r.x_slider_B0 = 0.69;
hsim.r.y_slider_B0 = 0.6;
hsim.r.y_slider_B1 = hsim.r.y_slider_B0+Sliderheight+0.001;
hsim.r.y_slider_k = hsim.r.y_slider_B1+Sliderheight+0.001;
hsim.r.y_slider_freq = hsim.r.y_slider_k+Sliderheight+0.001;
hsim.r.y_slider_Tx = hsim.r.y_slider_freq+Sliderheight+0.001;
hsim.r.y_slider_Sl = hsim.r.y_slider_Tx+Sliderheight+0.001;
hsim.r.y_slider_n = hsim.r.y_slider_Sl+Sliderheight+0.001;
hsim.r.y_text_B0 = hsim.r.y_slider_B0;
hsim.r.y_text_B1 = hsim.r.y_slider_B1;
hsim.r.y_text_k = hsim.r.y_slider_k;
hsim.r.y_text_freq = hsim.r.y_slider_freq;
hsim.r.y_text_Tx = hsim.r.y_slider_Tx;
hsim.r.y_text_Sl = hsim.r.y_slider_Sl;
hsim.r.y_text_n = hsim.r.y_slider_n;
hsim.r.y_text_Mx = 0.98-Textheight;%0.095+Sliderheight+Spacer;
hsim.r.y_text_Mn = 0.8;% 0.05+Sliderheight+Spacer;
hsim.r.w_slider_n = 0.3;
hsim.r.w_slider_Sl = 0.3;
hsim.r.w_slider_Tx = 0.3;
hsim.r.w_slider_freq = 0.3;
hsim.r.w_slider_k = 0.3;
hsim.r.w_slider_B1 = 0.3;
hsim.r.w_slider_B0 = 0.3;
hsim.r.h_slider_n = Sliderheight;
hsim.r.h_slider_Sl = Sliderheight;
hsim.r.h_slider_Tx = Sliderheight;
hsim.r.h_slider_freq = Sliderheight;
hsim.r.h_slider_k = Sliderheight;
hsim.r.h_slider_B1 = Sliderheight;
hsim.r.h_slider_B0 = Sliderheight;
hsim.r.x_axes_Magn = 0.05;
hsim.r.xo_axes_Magn = 0.01;
hsim.r.yo_axes_Magn = 0.25;
hsim.r.y_axes_Magn = 0.3;
hsim.r.ho_axes_Magn = 0.7;
hsim.r.h_axes_Magn = 0.65;
hsim.r.wo_axes_Magn = hsim.r.ho_axes_Magn/WHratio;
hsim.r.w_axes_Magn = hsim.r.h_axes_Magn/WHratio;
% WHratio
hsim.r.x_axes_Colorbar = 0.625;
hsim.r.y_axes_Colorbar = 0.8;
hsim.r.h_axes_Colorbar = 0.18;
hsim.r.w_axes_Colorbar = 0.02;
hsim.r.x_axes_Pulse = 0.05;
hsim.r.xo_axes_Pulse = 0.01;
hsim.r.yo_axes_Pulse = 0.01;
hsim.r.y_axes_Pulse = 0.05;
hsim.r.ho_axes_Pulse = 0.20;
hsim.r.h_axes_Pulse = 0.19;
hsim.r.wo_axes_Pulse = 0.95;
hsim.r.w_axes_Pulse = 0.9;
hsim.r.w_text_Mn =0.05;% 0.98;
hsim.r.w_text_Mx =0.05;% 0.48;
hsim.r.w_text_n =0.19;% 0.48;
hsim.r.w_text_Sl =0.19;% 0.48;
hsim.r.w_text_Tx =0.19;% 0.48;
hsim.r.w_text_freq =0.19;% 0.2;
hsim.r.w_text_k =0.19;% 0.2;
hsim.r.w_text_B1 =0.19;% 0.2;
hsim.r.w_text_B0 =0.19;% 0.2;
hsim.r.x_text_Mn = 0.55;
hsim.r.x_text_Mx = 0.55;
hsim.r.x_text_n = 0.49;
hsim.r.x_text_Sl = 0.49;
hsim.r.x_text_Tx = 0.49;
hsim.r.x_text_freq = 0.49;
hsim.r.x_text_k = 0.49;
hsim.r.x_text_B1 = 0.49;
hsim.r.x_text_B0 = 0.49;
hsim.r.h_text_Mn = Textheight;
hsim.r.h_text_Mx = Textheight;
hsim.r.h_text_n = Textheight;
hsim.r.h_text_Sl = Textheight;
hsim.r.h_text_Tx = Textheight;
hsim.r.h_text_freq = Textheight;
hsim.r.h_text_k = Textheight;
hsim.r.h_text_B1 = Textheight;
hsim.r.h_text_B0 = Textheight;
hsim.r.x_popupmenu_Magn = 0.005;
hsim.r.y_popupmenu_Magn = 0.94;
hsim.r.w_popupmenu_Magn = 0.1;
hsim.r.h_popupmenu_Magn = 0.05;
hsim.r.x_popupmenu_MagnUnits = 0.005+0.1+0.01;
hsim.r.y_popupmenu_MagnUnits = 0.94;
hsim.r.w_popupmenu_MagnUnits = 0.1;
hsim.r.h_popupmenu_MagnUnits = 0.05;
hsim.r.x_edit_B0 = 0.005+0.1+0.01+0.1+0.01;
hsim.r.y_edit_B0 = 0.97;
hsim.r.w_edit_B0 = 0.075;
hsim.r.h_edit_B0 = 0.02;
hsim.r.x_popupmenu_Pulse = 0.005+0.2+0.01+0.1+0.01;
hsim.r.y_popupmenu_Pulse = 0.94;
hsim.r.w_popupmenu_Pulse = 0.1;
hsim.r.h_popupmenu_Pulse = 0.05;
hsim.r.x_popupmenu_PulseUnits = 0.005+0.2+0.01+0.1+0.01+0.1+0.01;
hsim.r.y_popupmenu_PulseUnits = 0.94;
hsim.r.w_popupmenu_PulseUnits = 0.1;
hsim.r.h_popupmenu_PulseUnits = 0.05;
hsim.r.x_listbox1 = 0.69;
hsim.r.y_listbox1 = 0.8;%0.2+0.266667*2;
hsim.r.w_listbox1 = 0.3;
hsim.r.h_listbox1 = 0.18;% 0.26;
hsim.r.x_pushbutton_playx1 = 0.69;
hsim.r.y_pushbutton_playx1 = 0.77;
hsim.r.w_pushbutton_playx1 = 0.1;
hsim.r.h_pushbutton_playx1 = 0.02;
hsim.r.x_pushbutton_playx10 = 0.69+0.1;
hsim.r.y_pushbutton_playx10 = 0.77;
hsim.r.w_pushbutton_playx10 = 0.1;
hsim.r.h_pushbutton_playx10 = 0.02;
hsim.r.x_pushbutton_playx100 = 0.69+0.2;
hsim.r.y_pushbutton_playx100 = 0.77;
hsim.r.w_pushbutton_playx100 = 0.1;
hsim.r.h_pushbutton_playx100 = 0.02;
set(hsim.slider_n,'Position',[hsim.r.x_slider_n,hsim.r.y_slider_n,hsim.r.w_slider_n,hsim.r.h_slider_n])
set(hsim.slider_Sl,'Position',[hsim.r.x_slider_Sl,hsim.r.y_slider_Sl,hsim.r.w_slider_Sl,hsim.r.h_slider_Sl])
set(hsim.slider_Tx,'Position',[hsim.r.x_slider_Tx,hsim.r.y_slider_Tx,hsim.r.w_slider_Tx,hsim.r.h_slider_Tx])
set(hsim.slider_freq,'Position',[hsim.r.x_slider_freq,hsim.r.y_slider_freq,hsim.r.w_slider_freq,hsim.r.h_slider_freq])
set(hsim.slider_k,'Position',[hsim.r.x_slider_k,hsim.r.y_slider_k,hsim.r.w_slider_k,hsim.r.h_slider_k])
set(hsim.slider_B1,'Position',[hsim.r.x_slider_B1,hsim.r.y_slider_B1,hsim.r.w_slider_B1,hsim.r.h_slider_B1])
set(hsim.slider_B0,'Position',[hsim.r.x_slider_B0,hsim.r.y_slider_B0,hsim.r.w_slider_B0,hsim.r.h_slider_B0])
set(hsim.text_Mn,'Position',[hsim.r.x_text_Mn,hsim.r.y_text_Mn,hsim.r.w_text_Mn,hsim.r.h_text_Mn])
set(hsim.text_Mx,'Position',[hsim.r.x_text_Mx,hsim.r.y_text_Mx,hsim.r.w_text_Mx,hsim.r.h_text_Mx])
set(hsim.text_n,'Position',[hsim.r.x_text_n,hsim.r.y_text_n,hsim.r.w_text_n,hsim.r.h_text_n],'HorizontalAlignment','right')
set(hsim.text_Sl,'Position',[hsim.r.x_text_Sl,hsim.r.y_text_Sl,hsim.r.w_text_Sl,hsim.r.h_text_Sl],'HorizontalAlignment','right')
set(hsim.text_Tx,'Position',[hsim.r.x_text_Tx,hsim.r.y_text_Tx,hsim.r.w_text_Tx,hsim.r.h_text_Tx],'HorizontalAlignment','right')
set(hsim.text_freq,'Position',[hsim.r.x_text_freq,hsim.r.y_text_freq,hsim.r.w_text_freq,hsim.r.h_text_freq],'HorizontalAlignment','right')
set(hsim.text_k,'Position',[hsim.r.x_text_k,hsim.r.y_text_k,hsim.r.w_text_k,hsim.r.h_text_k],'HorizontalAlignment','right')
set(hsim.text_B1,'Position',[hsim.r.x_text_B1,hsim.r.y_text_B1,hsim.r.w_text_B1,hsim.r.h_text_B1],'HorizontalAlignment','right')
set(hsim.text_B0,'Position',[hsim.r.x_text_B0,hsim.r.y_text_B0,hsim.r.w_text_B0,hsim.r.h_text_B0],'HorizontalAlignment','right')
set(hsim.axes_Magn,'OuterPosition',[hsim.r.xo_axes_Magn,hsim.r.yo_axes_Magn,hsim.r.wo_axes_Magn,hsim.r.ho_axes_Magn])
set(hsim.axes_Magn,'Position',[hsim.r.x_axes_Magn,hsim.r.y_axes_Magn,hsim.r.w_axes_Magn,hsim.r.h_axes_Magn])
set(hsim.axes_Pulse,'OuterPosition',[hsim.r.xo_axes_Pulse,hsim.r.yo_axes_Pulse,hsim.r.wo_axes_Pulse,hsim.r.ho_axes_Pulse])
set(hsim.axes_Pulse,'Position',[hsim.r.x_axes_Pulse,hsim.r.y_axes_Pulse,hsim.r.w_axes_Pulse,hsim.r.h_axes_Pulse])
set(hsim.axes_Colorbar,'Position',[hsim.r.x_axes_Colorbar,hsim.r.y_axes_Colorbar,hsim.r.w_axes_Colorbar,hsim.r.h_axes_Colorbar])
set(hsim.listbox1,'Position',[hsim.r.x_listbox1,hsim.r.y_listbox1,hsim.r.w_listbox1,hsim.r.h_listbox1])
set(hsim.popupmenu_Magn,'Position',[hsim.r.x_popupmenu_Magn,hsim.r.y_popupmenu_Magn,hsim.r.w_popupmenu_Magn,hsim.r.h_popupmenu_Magn])
set(hsim.popupmenu_MagnUnits,'Position',[hsim.r.x_popupmenu_MagnUnits,hsim.r.y_popupmenu_MagnUnits,hsim.r.w_popupmenu_MagnUnits,hsim.r.h_popupmenu_MagnUnits])
set(hsim.edit_B0,'Position',[hsim.r.x_edit_B0,hsim.r.y_edit_B0,hsim.r.w_edit_B0,hsim.r.h_edit_B0])
set(hsim.popupmenu_Pulse,'Position',[hsim.r.x_popupmenu_Pulse,hsim.r.y_popupmenu_Pulse,hsim.r.w_popupmenu_Pulse,hsim.r.h_popupmenu_Pulse])
set(hsim.popupmenu_PulseUnits,'Position',[hsim.r.x_popupmenu_PulseUnits,hsim.r.y_popupmenu_PulseUnits,hsim.r.w_popupmenu_PulseUnits,hsim.r.h_popupmenu_PulseUnits])
set(hsim.pushbutton_playx1,'Position',[hsim.r.x_pushbutton_playx1,hsim.r.y_pushbutton_playx1,hsim.r.w_pushbutton_playx1,hsim.r.h_pushbutton_playx1],'String','Play x1')
set(hsim.pushbutton_playx10,'Position',[hsim.r.x_pushbutton_playx10,hsim.r.y_pushbutton_playx10,hsim.r.w_pushbutton_playx10,hsim.r.h_pushbutton_playx10],'String','Play x10')
set(hsim.pushbutton_playx100,'Position',[hsim.r.x_pushbutton_playx100,hsim.r.y_pushbutton_playx100,hsim.r.w_pushbutton_playx100,hsim.r.h_pushbutton_playx100],'String','Play x100')
if str2double(hsim.sim.Dim(1)) > 1
set(hsim.axes_Colorbar,'Visible','on')
set(hsim.text_Mn,'Visible','on')
set(hsim.text_Mx,'Visible','on')
else
set(hsim.axes_Colorbar,'Visible','off')
set(hsim.text_Mn,'Visible','off')
set(hsim.text_Mx,'Visible','off')
end
set(hsim.text_freq,'Visible','on')
set(hsim.text_k,'Visible','on')
%%
if strcmpi(hsim.sim.sim_n,'last')
set(hsim.pushbutton_playx1,'Visible','off')
set(hsim.pushbutton_playx10,'Visible','off')
set(hsim.pushbutton_playx100,'Visible','off')
set(hsim.slider_n,'Visible','off','Value',1)
set(hsim.text_n,'Visible','off');
hsim.nNo = 1;
set(hsim.pushbutton_playx1,'Visible','off')
elseif strcmpi(hsim.sim.sim_n,'all')
set(hsim.pushbutton_playx1,'Visible','on')
set(hsim.pushbutton_playx10,'Visible','on')
set(hsim.pushbutton_playx100,'Visible','on')
set(hsim.slider_n,'Min',1)
set(hsim.slider_n,'Max',hsim.sim.N)
TimeSliderStep = [1, 1] / (hsim.sim.N - 1);
set(hsim.slider_n,'SliderStep',TimeSliderStep)
hsim.nNo = hsim.sim.N;
set(hsim.slider_n,'Visible','on','Value',hsim.nNo)
set(hsim.text_n,'Visible','on','String',sprintf('Timeframe %i dt (%1.1e s) of %i dt (%1.1e s)',hsim.nNo,hsim.nNo*hsim.sim.dt,hsim.sim.N,hsim.sim.N.*hsim.sim.dt))
end
%%
if hsim.sim.Dim(1) == '3'
set(hsim.slider_Sl,'Min',1)
set(hsim.slider_Sl,'Max',hsim.sim.R(3))
SliceSliderStep = [1, 1] / (hsim.sim.R(3) - 1);
set(hsim.slider_Sl,'SliderStep',SliceSliderStep)
hsim.SlNo = round(hsim.sim.R(3)/2);
set(hsim.slider_Sl,'Visible','on','Value',hsim.SlNo)
set(hsim.text_Sl,'Visible','on','String',sprintf('Slice %i of %i',hsim.SlNo,hsim.sim.R(3)))
else
set(hsim.slider_Sl,'Visible','off','Value',1)
set(hsim.text_Sl,'Visible','off');
hsim.SlNo = 1;
end
%%
if hsim.sim.pTx > 1 && strcmpi(hsim.sim.sim_Tx,'sep')
set(hsim.slider_Tx,'Min',1)
set(hsim.slider_Tx,'Max',hsim.sim.pTx+1)
ChannelSliderStep = [1, 1] / (hsim.sim.pTx+1 - 1);
set(hsim.slider_Tx,'SliderStep',ChannelSliderStep)
hsim.pTxNo = hsim.sim.pTx+1;
set(hsim.slider_Tx,'Visible','on','Value',hsim.pTxNo)
if hsim.pTxNo == hsim.sim.pTx+1
set(hsim.text_Tx,'Visible','on','String',sprintf('All %i Tx',hsim.sim.pTx))
else
set(hsim.text_Tx,'Visible','on','String',sprintf('Tx %i of %i',hsim.pTxNo,hsim.sim.pTx))
end
else
set(hsim.slider_Tx,'Visible','off','Value',1)
set(hsim.text_Tx,'Visible','off');
hsim.pTxNo = 1;
end
%%
if hsim.sim.Dim(2) == '+' && hsim.sim.Dim(1) ~= '0'
hsim.freq = linspace(hsim.sim.Dv(1),hsim.sim.Dv(2),hsim.sim.Rv);
set(hsim.slider_freq,'Min',1)
set(hsim.slider_freq,'Max',hsim.sim.Rv)
FreqSliderStep = [1, 1] / (hsim.sim.Rv - 1);
set(hsim.slider_freq,'SliderStep',FreqSliderStep)
hsim.freqNo = round(hsim.sim.Rv/2);
if hsim.sim.Dim(1) == '1'
set(hsim.slider_freq,'Visible','off')
set(hsim.text_freq,'Visible','off')
else
set(hsim.slider_freq,'Visible','on','Value',hsim.freqNo)
set(hsim.text_freq,'Visible','on','String',sprintf('Frequency: %.2f [Hz]',hsim.freq(hsim.freqNo)))
end
else