From b42a7ef0540d7c8d14cadec533cd87847b1e76a6 Mon Sep 17 00:00:00 2001 From: nw20 Date: Mon, 12 Feb 2024 17:10:38 +0000 Subject: [PATCH] deploy: ba8fb589bbfcf7310cbbb41d4cc1cb07a1a27bf7 --- _sources/pf7/evolution-malaria-control.md | 2 +- _sources/pf7/popgen.md | 2 +- _sources/pf7/summarise-data.md | 2 +- _sources/pf7/useful-how-tos.md | 2 +- _static/__pycache__/__init__.cpython-38.pyc | Bin 194 -> 194 bytes genindex.html | 39 +++++---------- landing-page.html | 47 +++++++----------- objects.inv | Bin 1117 -> 1118 bytes pf7/Data_access.html | 43 ++++++---------- pf7/api.html | 39 +++++---------- pf7/evolution-malaria-control.html | 45 ++++++----------- .../chloroquine-resistance-map.html | 39 +++++---------- .../csp-cterm-analysis.html | 43 ++++++---------- .../drug-resistance-summary.html | 43 ++++++---------- .../summarise_hrp2_hrp3_deletions.html | 39 +++++---------- .../visualise_hrp2_hrp3_deletions.html | 39 +++++---------- pf7/popgen.html | 45 ++++++----------- pf7/popgen/PCoA.html | 43 ++++++---------- .../geographic-genetic-differentiation.html | 39 +++++---------- pf7/popgen/neighbour-joining-tree-swga.html | 39 +++++---------- pf7/popgen/proportion-eba175.html | 39 +++++---------- pf7/summarise-data.html | 45 ++++++----------- .../barplot-samples-by-country.html | 39 +++++---------- pf7/summarise_data/global-sample-map.html | 43 ++++++---------- .../sample-collection-over-time.html | 39 +++++---------- pf7/summarise_data/sample-summary-table.html | 43 ++++++---------- pf7/summarise_data/variant-summary-table.html | 39 +++++---------- pf7/useful-how-tos.html | 45 ++++++----------- pf7/useful_how_tos/igv-notebook.html | 47 +++++++----------- pv4/Data_access.html | 39 +++++---------- pv4/api.html | 39 +++++---------- search.html | 39 +++++---------- searchindex.js | 2 +- 33 files changed, 375 insertions(+), 713 deletions(-) diff --git a/_sources/pf7/evolution-malaria-control.md b/_sources/pf7/evolution-malaria-control.md index 5114b03..1ab67f7 100644 --- a/_sources/pf7/evolution-malaria-control.md +++ b/_sources/pf7/evolution-malaria-control.md @@ -1,4 +1,4 @@ -# **Pf7 Analysis Guides*:**Study Evolution Against Malaria Control Measures +# **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures The notebooks below walk through the analysis of evolution against malaria control measures in Pf7 samples. Current topics include resistance to antimalarial drugs and genetic variation in genes linked to rapid diagnostic test failure (*hrp2* and *hrp3*) and vaccine escape (*csp*). diff --git a/_sources/pf7/popgen.md b/_sources/pf7/popgen.md index 32b4c1b..851be4b 100644 --- a/_sources/pf7/popgen.md +++ b/_sources/pf7/popgen.md @@ -1,4 +1,4 @@ -# **Pf7 Analysis Guides*:** Population Structure and Selection +# **Pf7 Analysis Guides:** Population Structure and Selection The notebooks below cover the population genetic analysis of Pf7 samples. You can run analyses of population structure (PCoA, NJT) or look at selection in the gene *eba175*, for example. diff --git a/_sources/pf7/summarise-data.md b/_sources/pf7/summarise-data.md index 153475a..5027dcc 100644 --- a/_sources/pf7/summarise-data.md +++ b/_sources/pf7/summarise-data.md @@ -1,4 +1,4 @@ -# **Pf7 Analysis Guides*:** Summarise Pf7 Data +# **Pf7 Analysis Guides:** Summarise Pf7 Data The notebooks below provide guides to summarising data from the Pf7 data release. diff --git a/_sources/pf7/useful-how-tos.md b/_sources/pf7/useful-how-tos.md index 64cf7f5..4234f1b 100644 --- a/_sources/pf7/useful-how-tos.md +++ b/_sources/pf7/useful-how-tos.md @@ -1,4 +1,4 @@ -# **Pf7 Analysis Guides*:** Useful Genomics How-Tos +# **Pf7 Analysis Guides:** Useful Genomics How-Tos These notebooks cover different techniques for the genomic analysis of Pf7 data, which are not explicitly linked to a display item from the [Pf7 paper.](https://wellcomeopenresearch.org/articles/8-22/v1) diff --git a/_static/__pycache__/__init__.cpython-38.pyc b/_static/__pycache__/__init__.cpython-38.pyc index 66d088c26193b68638d93be2b742f63f1dc172bd..4cad6e46ccd7f86c947eb1e7cc09995a45947787 100644 GIT binary patch delta 18 YcmX@ac!-fJl$V!_0SLYYOyt@D04VPSqW}N^ delta 18 YcmX@ac!-fJl$V!_0SGkwCvxoo03_uD)Bpeg diff --git a/genindex.html b/genindex.html index 850aa25..73c580a 100644 --- a/genindex.html +++ b/genindex.html @@ -100,13 +100,10 @@

MalariaGEN parasite data user guide

  • - - - Pf7 Analysis Guides - - : - - * Useful Genomics How-Tos + + Pf7 Analysis Guides: + + Useful Genomics How-Tos
  • - - - Pf7 Analysis Guides - - : - - * Summarise Pf7 Data + + Pf7 Analysis Guides: + + Summarise Pf7 Data
  • - * - - Pf7 Analysis Guides - - :**Study Evolution Against Malaria Control Measures + **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
  • - - - Pf7 Analysis Guides - - : - - * Population Structure and Selection + + Pf7 Analysis Guides: + + Population Structure and Selection
  • - - - Pf7 Analysis Guides - - : - - * Useful Genomics How-Tos + + Pf7 Analysis Guides: + + Useful Genomics How-Tos
  • - - - Pf7 Analysis Guides - - : - - * Summarise Pf7 Data + + Pf7 Analysis Guides: + + Summarise Pf7 Data
  • - * - - Pf7 Analysis Guides - - :**Study Evolution Against Malaria Control Measures + **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
  • - - - Pf7 Analysis Guides - - : - - * Population Structure and Selection + + Pf7 Analysis Guides: + + Population Structure and Selection