From f256f853a7c97a74cf308124b869b4cb94ba4f3d Mon Sep 17 00:00:00 2001 From: nw20 Date: Fri, 9 Feb 2024 16:12:59 +0000 Subject: [PATCH] deploy: 66248298565e4b0ee00806210c2d037e25f0571a --- _static/__pycache__/__init__.cpython-38.pyc | Bin 194 -> 194 bytes genindex.html | 127 ++++++++++---- landing-page.html | 149 +++++++++++----- pf7/Data_access.html | 127 ++++++++++---- pf7/analysis_examples/PCoA.html | 133 +++++++++++---- .../barplot-samples-by-country.html | 153 ++++++++++++----- .../chloroquine-resistance-map.html | 153 ++++++++++++----- pf7/analysis_examples/csp-cterm-analysis.html | 153 ++++++++++++----- .../drug-resistance-summary.html | 153 ++++++++++++----- pf7/analysis_examples/evolution.html | 127 ++++++++++---- .../geographic-genetic-differentiation.html | 127 ++++++++++---- pf7/analysis_examples/global-sample-map.html | 153 ++++++++++++----- pf7/analysis_examples/igv-notebook.html | 153 ++++++++++++----- .../neighbour-joining-tree-swga.html | 127 ++++++++++---- pf7/analysis_examples/popgen.html | 161 +++++++++++------- pf7/analysis_examples/proportion-eba175.html | 127 ++++++++++---- .../sample-collection-over-time.html | 153 ++++++++++++----- .../sample-summary-table.html | 153 ++++++++++++----- pf7/analysis_examples/summarise-data.html | 127 ++++++++++---- .../summarise_hrp2_hrp3_deletions.html | 153 ++++++++++++----- pf7/analysis_examples/useful-how-tos.html | 127 ++++++++++---- .../variant-summary-table.html | 153 ++++++++++++----- .../visualise_hrp2_hrp3_deletions.html | 153 ++++++++++++----- pf7/api.html | 127 ++++++++++---- pf7/examples.html | 155 ++++++++++++----- pv4/Data_access.html | 127 ++++++++++---- pv4/api.html | 127 ++++++++++---- search.html | 127 ++++++++++---- searchindex.js | 2 +- 29 files changed, 2784 insertions(+), 1023 deletions(-) diff --git a/_static/__pycache__/__init__.cpython-38.pyc b/_static/__pycache__/__init__.cpython-38.pyc index 4b759e2a8205cef798ef75b93dd8be9ace40bed7..e572e28d1060aac60a9c75d773d150ebb88df217 100644 GIT binary patch delta 18 YcmX@ac!-fJl$V!_0SLbMP2}1E04UuAp8x;= delta 18 YcmX@ac!-fJl$V!_0SKmfOyt@D04DDQI{*Lx diff --git a/genindex.html b/genindex.html index 6a792e0..d4997f1 100644 --- a/genindex.html +++ b/genindex.html @@ -108,41 +108,100 @@

MalariaGEN parasite data user guide

diff --git a/landing-page.html b/landing-page.html index 501c385..d449d35 100644 --- a/landing-page.html +++ b/landing-page.html @@ -116,41 +116,100 @@

MalariaGEN parasite data user guide

@@ -284,13 +343,21 @@

MalariaGEN parasite data user guidePf7 Data Access
  • Pf7 Analysis Examples
  • Pf7 API
    • diff --git a/pf7/Data_access.html b/pf7/Data_access.html index ea536e5..6fce0ef 100644 --- a/pf7/Data_access.html +++ b/pf7/Data_access.html @@ -117,41 +117,100 @@

    MalariaGEN parasite data user guide

    diff --git a/pf7/analysis_examples/PCoA.html b/pf7/analysis_examples/PCoA.html index e273fea..3f65b42 100644 --- a/pf7/analysis_examples/PCoA.html +++ b/pf7/analysis_examples/PCoA.html @@ -52,7 +52,7 @@ - + @@ -117,41 +117,100 @@

    MalariaGEN parasite data user guide

    @@ -1599,11 +1658,11 @@

    Notebook Complete! +

    previous

    -

    Population Structure and Selection in Pf7

    +

    Analyse csp C-Terminal Variation

     diff --git a/pf7/analysis_examples/barplot-samples-by-country.html b/pf7/analysis_examples/barplot-samples-by-country.html index ff6ab65..839098d 100644 --- a/pf7/analysis_examples/barplot-samples-by-country.html +++ b/pf7/analysis_examples/barplot-samples-by-country.html @@ -51,6 +51,8 @@ + + @@ -99,57 +101,116 @@

    MalariaGEN parasite data user guide

    Pf7

    -