LICENSE

PURPOSE

Parsnp is a command-line-tool for efficient microbial core genome alignment 
and SNP detection. Parsnp was designed to work in tandem with Gingr, 
a flexible platform for visualizing genome alignments and phylogenetic trees; 
both Parsnp and Gingr form part of the Harvest suite. Parsnp is implemented in C++ and Python.

COPYRIGHT LICENSE

Copyright © 2014, Battelle National Biodefense Institute (BNBI);
all rights reserved. Authored by: Brian Ondov, Todd Treangen, and
Adam Phillippy

This Software was prepared for the Department of Homeland Security
(DHS) by the Battelle National Biodefense Institute, LLC (BNBI) as
part of contract HSHQDC-07-C-00020 to manage and operate the National
Biodefense Analysis and Countermeasures Center (NBACC), a Federally
Funded Research and Development Center.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:

1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.

2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.

3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.