From df3f3f1abc8707073dc37655825af267a0e77507 Mon Sep 17 00:00:00 2001
From: markus1bauer <markus1.bauer@tum.de>
Date: Sat, 27 Apr 2024 01:10:37 +0200
Subject: [PATCH] Update

---
 .github/workflows/data-tests.yaml |  6 +++---
 R/CI_1_Generate_reports.R         | 12 ------------
 2 files changed, 3 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/data-tests.yaml b/.github/workflows/data-tests.yaml
index df80620..d8293fc 100644
--- a/.github/workflows/data-tests.yaml
+++ b/.github/workflows/data-tests.yaml
@@ -9,12 +9,12 @@ on:
     paths:
       - 'data**'
       - '!README.md'
-      - 'R/ci_1_generate_reports.R'
+      - 'R/CI_1_Generate_reports.R'
   pull_request:
     paths:
       - 'data**'
       - '!README.md'
-      - 'R/ci_1_generate_reports.R'
+      - 'R/CI_1_Generate_reports.R'
 
 # Name the workflow as it will appear on GA status page
 # https://github.com/SCBI-ForestGEO/SCBImortality/actions
@@ -50,7 +50,7 @@ jobs:
       - name: Generate reports
         id: Generate_reports
         run: |
-          source("R/ci_1_generate_reports.R")
+          source("R/CI_1_Generate_reports.R")
         shell: Rscript {0}
 
       # Commit and push all new files, where commits are assigned to GA bot:
diff --git a/R/CI_1_Generate_reports.R b/R/CI_1_Generate_reports.R
index a373e3b..725f71a 100644
--- a/R/CI_1_Generate_reports.R
+++ b/R/CI_1_Generate_reports.R
@@ -314,15 +314,3 @@ ggsave(
   here("tests", "testthat", "reports_missing_traits.png"),
   dpi = 300, height = 10, units = "cm"
 )
-
-
-#   ### Check that each species occurs at least one time ###
-#   group_by(name) %>%
-#   arrange(name) %>%
-#   select(name, tidyselect::all_of(sites$id)) %>%
-#   mutate(
-#     total = sum(c_across(
-#       starts_with("L") | starts_with("W")),
-#       na.rm = TRUE),
-#     presence = if_else(total > 0, 1, 0)
-#   )