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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools>=43", "setuptools_scm[toml]"]
build-backend = "setuptools.build_meta"
[project]
name = "gaftools"
authors = [
{name = "Arda Soylev"},
{name = "Samarendra Pani", email = "samarendra.pani@hhu.de"},
{name = "Fawaz Dabbaghie"},
{name = "Tobias Marschall"}
]
maintainers = [
{name = "Samarendra Pani", email = "samarendra.pani@hhu.de"}
]
description = "Toolkit for pangenome alignments"
readme = 'docs/README.rst'
requires-python = ">=3.8"
license = {text = "MIT"}
classifiers = [
"Development Status :: 4 - Beta",
"Programming Language :: Python :: 3",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Environment :: Console",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics"
]
dynamic = ["version", "dependencies"]
keywords = ["bioinformatics", "genomics", "pangenome", "toolkit"]
[project.urls]
"Homepage" = "https://github.com/marschall-lab/gaftools"
"Issues" = "https://github.com/marschall-lab/gaftools/issues"
"Changelog" = "https://github.com/marschall-lab/gaftools/blob/main/CHANGES.rst"
[project.scripts]
gaftools = "gaftools.__main__:main"
[project.optional-dependencies]
dev = [
"pytest",
"coverage",
"tox",
"ruff",
"sphinx",
"sphinx-issues",
"sphinx-rtd-theme",
"sphinx-better-subsection",
"setuptools_scm"
]
docs = [
"sphinx",
"sphinx-rtd-theme",
"sphinx-issues",
"sphinx-better-subsection"
]
[tool.setuptools.packages.find]
include = ["gaftools*"]
[tool.setuptools_scm]
write_to = "gaftools/_version.py"
[tool.pytest.ini_options]
addopts = "--doctest-modules"
testpaths = ["tests", "gaftools"]
[tool.ruff]
line-length = 100
lint.ignore = [
"E203", # whitespace before ':' -- must be ignored for Black
"E501", # line too long
"E741", # Ambiguous variable name
]