diff --git a/_data/publications/2023-10-20-Ashraf.yml b/_data/publications/2023-10-20-Ashraf.yml new file mode 100644 index 0000000..3657de0 --- /dev/null +++ b/_data/publications/2023-10-20-Ashraf.yml @@ -0,0 +1,6 @@ +title: "Allele detection using k -mer-based sequencing error profiles" +authors: Ashraf H, Ebler J, Marschall T +text: https://doi.org/10.1093/bioadv/vbad149 +date: "2023-10-20" +journal: Bioinformatics Advances +pubmed: 37928341 diff --git a/_data/publications/2023-05-04-Harvey.yml b/_data/publications/2023-12-07-Harvey.yml similarity index 56% rename from _data/publications/2023-05-04-Harvey.yml rename to _data/publications/2023-12-07-Harvey.yml index fbd602e..49bbecf 100644 --- a/_data/publications/2023-05-04-Harvey.yml +++ b/_data/publications/2023-12-07-Harvey.yml @@ -1,6 +1,6 @@ -title: "Whole-genome long-read sequencing downsampling and its effect on variant calling precision and recall" +title: "Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall" authors: Harvey WT, Ebert P, Ebler J, Audano PA, Munson KM, Hoekzema K, Porubsky D, Beck CR, Marschall T, Garimella K, Eichler EE -text: https://doi.org/10.1101/2023.05.04.539448 -date: "2023-05-04" -journal: bioRxiv -pubmed: 37205567 +text: https://doi.org/10.1101/gr.278070.123 +date: "2023-12-07" +journal: Genome Research +pubmed: 38190646 diff --git a/_data/publications/2024-01-19-Mari.yml b/_data/publications/2024-01-19-Mari.yml new file mode 100644 index 0000000..7a7dad8 --- /dev/null +++ b/_data/publications/2024-01-19-Mari.yml @@ -0,0 +1,6 @@ +title: "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data" +authors: Serra Mari R, Schrinner S, Finkers R, Ziegler FMR, Arens P, Schmidt MH, Usadel B, Klau GW, Marschall T +text: https://doi.org/10.1186/s13059-023-03160-z +date: "2024-01-19" +journal: Genome Biology +pubmed: 38243222 diff --git a/_data/publications/2024-02-16-Henglin.yml b/_data/publications/2024-02-16-Henglin.yml new file mode 100644 index 0000000..7e7eedb --- /dev/null +++ b/_data/publications/2024-02-16-Henglin.yml @@ -0,0 +1,6 @@ +title: "Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing" +authors: Henglin M, Ghareghani M, Harvey W, Porubsky D, Koren S, Eichler E, Ebert P, Marschall T +text: https://doi.org/10.1101/2024.02.15.580432 +date: "2024-02-16" +journal: bioRxiv +pubmed: 38529499 diff --git a/_data/publications/2024-03-20-Plender.yml b/_data/publications/2024-03-20-Plender.yml new file mode 100644 index 0000000..8ea05c1 --- /dev/null +++ b/_data/publications/2024-03-20-Plender.yml @@ -0,0 +1,6 @@ +title: "Structural and genetic diversity in the secreted mucins, MUC5AC and MUC5B" +authors: Plender E, Prodanov T, Hsieh P, Nizamis E, Harvey W, Sulovari A, Munson K, Kaufman E, O'Neal W, Valdmanis P, Marschall T, Eichler E +text: https://doi.org/10.1101/2024.03.18.585560 +date: "2024-03-20" +journal: bioRxiv +pubmed: 38562829 diff --git a/_data/publications/2024-04-20-Schloissnig.yml b/_data/publications/2024-04-20-Schloissnig.yml new file mode 100644 index 0000000..ab06c9f --- /dev/null +++ b/_data/publications/2024-04-20-Schloissnig.yml @@ -0,0 +1,6 @@ +title: "Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project" +authors: Schloissnig S, Pani S, Rodriguez-Martin B, Ebler J, Hain C, Tsapalou V, Söylev A, Hüther P, Ashraf H, Prodanov T, Asparuhova M, Hunt S, Rausch T, Marschall T, Korbel J +text: https://doi.org/10.1101/2024.04.18.590093 +date: "2024-04-20" +journal: bioRxiv +pubmed: 38659906