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A very useful visualization to QC variant call sets has been this: https://www.nature.com/articles/nature15394/figures/5
That is, plotting the number of variants (Y) vs their allele count (X) in a log-log plot. This should be a power law and hence a straight line. Would it be easy to extend Panacus to output such plots as well for bp/#node/#edges? At least for edges I would hope/expect to get a straight line as well if the graph is good. In any case, being able to produce such plots would be very valuable.
The text was updated successfully, but these errors were encountered:
A very useful visualization to QC variant call sets has been this:
https://www.nature.com/articles/nature15394/figures/5
That is, plotting the number of variants (Y) vs their allele count (X) in a log-log plot. This should be a power law and hence a straight line. Would it be easy to extend Panacus to output such plots as well for bp/#node/#edges? At least for edges I would hope/expect to get a straight line as well if the graph is good. In any case, being able to produce such plots would be very valuable.
The text was updated successfully, but these errors were encountered: