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map reads to ref chrY (hg38 and T2T) #6

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ptrebert opened this issue Mar 17, 2022 · 1 comment
Open

map reads to ref chrY (hg38 and T2T) #6

ptrebert opened this issue Mar 17, 2022 · 1 comment

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@ptrebert
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Primary interest: HiFi reads

Requested output by Pille:

read depth, both with and without secondary alignments
@ptrebert
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@pilleh
These files are now also produced and copied. Output files contain all secondary alignments. I don't mark this as done as I still have to implement the read depth calculation.

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@ptrebert