.pre-commit-config.yaml

default_language_version:
  python: python3

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.4.0
    hooks:
      # list of supported hooks: https://pre-commit.com/hooks.html
      - id: trailing-whitespace
      - id: end-of-file-fixer
      - id: check-docstring-first
      - id: check-yaml
      - id: debug-statements
      - id: detect-private-key
      - id: check-executables-have-shebangs
      - id: check-case-conflict
      - id: check-added-large-files

  # # python code formatting
  # - repo: https://github.com/psf/black
  #   rev: 23.1.0
  #   hooks:
  #     - id: black
  #       args: [--line-length, "99"]

  # # python import sorting
  # - repo: https://github.com/PyCQA/isort
  #   rev: 5.12.0
  #   hooks:
  #     - id: isort
  #       args: ["--profile", "black", "--filter-files"]

  # python upgrading syntax to newer version
  - repo: https://github.com/asottile/pyupgrade
    rev: v3.3.1
    hooks:
      - id: pyupgrade
        args: [--py38-plus]

  # python docstring formatting
  - repo: https://github.com/myint/docformatter
    rev: v1.5.1
    hooks:
      - id: docformatter
        args: [--in-place, --wrap-summaries=99, --wrap-descriptions=99]

  # # python check (PEP8), programming errors and code complexity
  # - repo: https://github.com/PyCQA/flake8
  #   rev: 6.0.0
  #   hooks:
  #     - id: flake8
  #       args:
  #         [
  #           "--extend-ignore",
  #           "E203,E402,E501,F401,F841",
  #           "--exclude",
  #           "logs/*,data/*",
  #         ]

  # yaml formatting
  - repo: https://github.com/pre-commit/mirrors-prettier
    rev: v3.0.0-alpha.6
    hooks:
      - id: prettier
        types: [yaml]
        exclude: "environment.yaml"

  # md formatting
  - repo: https://github.com/executablebooks/mdformat
    rev: 0.7.16
    hooks:
      - id: mdformat
        args: ["--number"]
        additional_dependencies:
          - mdformat-gfm
          - mdformat-tables
          - mdformat_frontmatter
          # - mdformat-toc
          # - mdformat-black