CITATION.cff

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title: >-
  Robust and unbiased estimation of the background
  distribution for automated quantitative imaging
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Mauro
    family-names: Silberberg
    email: maurosilber@df.uba.ar
    orcid: 'https://orcid.org/0000-0002-2402-1100'
    affiliation: >-
      Department of Physics, FCEN, University of
      Buenos Aires and IFIBA, CONICET, Buenos Aires.
      C1428EHA, Argentina
  - given-names: Hernán Edgardo
    family-names: Grecco
    email: hgrecco@df.uba.ar
    affiliation: >-
      Department of Physics, FCEN, University of
      Buenos Aires and IFIBA, CONICET, Buenos Aires.
      C1428EHA, Argentina; and, Department of
      Systemic Cell Biology, Max Planck Institute of
      Molecular Physiology, Dortmund, 44227, Germany
    orcid: 'https://orcid.org/0000-0002-1165-4320'
identifiers:
  - type: doi
    value: 10.1364/JOSAA.477468
abstract: >-
  Background estimation is the first step in quantitative analysis of images.
  It has an impact on all subsequent analyses,
  in particular for segmentation and calculation of ratiometric quantities.
  Most methods recover only a single value such as the median
  or yield a biased estimation in non-trivial cases.
  We introduce,
  to our knowledge,
  the first method to recover an unbiased estimation of background distribution.
  It leverages the lack of local spatial correlation in background pixels
  to robustly select a subset that accurately represents the background.
  The resulting background distribution can be used to test for foreground membership of individual pixels
  or estimate confidence intervals in derived quantities.
license: MIT