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mySomaticSeq_stable.yml
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mySomaticSeq_stable.yml
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name: mySomaticSeq
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _py-xgboost-mutex=2.0=cpu_0
- _r-mutex=1.0.1=anacondar_1
- bamtools=2.5.1=he513fc3_6
- bcftools=1.10.2=h4f4756c_3
- bedops=2.4.39=h7d875b9_1
- bedtools=2.30.0=h7d7f7ad_1
- binutils_impl_linux-64=2.35.1=h193b22a_2
- binutils_linux-64=2.35=h67ddf6f_30
- bioconductor-annotationdbi=1.52.0=r40hdfd78af_1
- bioconductor-annotationfilter=1.14.0=r40hdfd78af_1
- bioconductor-biobase=2.50.0=r40hd029910_1
- bioconductor-biocfilecache=1.14.0=r40hdfd78af_1
- bioconductor-biocgenerics=0.36.0=r40hdfd78af_1
- bioconductor-biocparallel=1.24.1=r40h399db7b_0
- bioconductor-biomart=2.46.3=r40hdfd78af_0
- bioconductor-biostrings=2.58.0=r40hd029910_1
- bioconductor-biovizbase=1.38.0=r40hd029910_1
- bioconductor-bsgenome=1.58.0=r40hdfd78af_1
- bioconductor-bsgenome.hsapiens.ucsc.hg38=1.4.3=r40_1
- bioconductor-cosmic.67=1.26.0=r40_0
- bioconductor-coverageview=1.28.0=r40hdfd78af_1
- bioconductor-delayedarray=0.16.3=r40hd029910_0
- bioconductor-ensembldb=2.14.0=r40hdfd78af_1
- bioconductor-genomeinfodb=1.26.4=r40hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.4=r40hdfd78af_1
- bioconductor-genomicalignments=1.26.0=r40hd029910_1
- bioconductor-genomicfeatures=1.42.2=r40hdfd78af_0
- bioconductor-genomicranges=1.42.0=r40hd029910_1
- bioconductor-ggbio=1.38.0=r40hdfd78af_1
- bioconductor-graph=1.68.0=r40hd029910_1
- bioconductor-iranges=2.24.1=r40hd029910_0
- bioconductor-matrixgenerics=1.2.1=r40hdfd78af_0
- bioconductor-mutationalpatterns=3.0.1=r40hdfd78af_0
- bioconductor-organismdbi=1.32.0=r40hdfd78af_1
- bioconductor-pcamethods=1.82.0=r40h399db7b_1
- bioconductor-protgenerics=1.22.0=r40hdfd78af_1
- bioconductor-rbgl=1.66.0=r40h399db7b_1
- bioconductor-rhtslib=1.22.0=r40hd029910_1
- bioconductor-rsamtools=2.6.0=r40h399db7b_1
- bioconductor-rtracklayer=1.50.0=r40h7f5ccec_2
- bioconductor-s4vectors=0.28.1=r40hd029910_0
- bioconductor-somaticsignatures=2.26.0=r40hdfd78af_1
- bioconductor-summarizedexperiment=1.20.0=r40hdfd78af_1
- bioconductor-variantannotation=1.36.0=r40hd029910_1
- bioconductor-xvector=0.30.0=r40hd029910_1
- bioconductor-zlibbioc=1.36.0=r40hd029910_1
- bwidget=1.9.14=ha770c72_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2021.5.30=ha878542_0
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2021.5.30=py38h578d9bd_0
- curl=7.75.0=h979ede3_0
- fontconfig=2.13.1=hba837de_1004
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gatk4=4.2.0.0=0
- gcc_impl_linux-64=9.3.0=h70c0ae5_18
- gcc_linux-64=9.3.0=hf25ea35_30
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.3.0=hc4a2995_18
- gfortran_linux-64=9.3.0=hdc58fab_30
- graphite2=1.3.13=h58526e2_1001
- gsl=2.6=he838d99_2
- gxx_impl_linux-64=9.3.0=hd87eabc_18
- gxx_linux-64=9.3.0=h3fbe746_30
- harfbuzz=2.8.0=h83ec7ef_1
- htslib=1.10.2=hd3b49d5_1
- icu=68.1=h58526e2_0
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- kernel-headers_linux-64=2.6.32=h77966d4_13
- krb5=1.17.2=h926e7f8_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.75.0=hc4aaa36_0
- libdeflate=1.6=h516909a_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-devel_linux-64=9.3.0=h7864c58_18
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=9.3.0=hff62375_18
- libgfortran5=9.3.0=hff62375_18
- libglib=2.68.0=h3e27bee_2
- libgomp=9.3.0=h2828fa1_18
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=8_openblas
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-devel_linux-64=9.3.0=hb016644_18
- libstdcxx-ng=9.3.0=h6de172a_18
- libtiff=4.2.0=hdc55705_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxgboost=1.3.3=h9c3ff4c_2
- libxml2=2.9.10=h72842e0_3
- lofreq=2.1.5=py38h1bd3507_3
- lz4-c=1.9.3=h9c3ff4c_0
- make=4.3=hd18ef5c_1
- muse=1.0.rc=h2e03b76_5
- ncurses=6.2=h58526e2_4
- numpy=1.20.1=py38h18fd61f_0
- openjdk=8.0.282=h7f98852_0
- openssl=1.1.1k=h7f98852_0
- pandas=1.2.3=py38h51da96c_0
- pango=1.42.4=h69149e4_5
- pcre=8.44=he1b5a44_0
- pcre2=10.36=h032f7d1_1
- perl=5.32.0=h36c2ea0_0
- pip=21.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- py-xgboost=1.3.3=py38h578d9bd_2
- pysam=0.16.0.1=py38hbdc2ae9_1
- python=3.8.8=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.8=1_cp38
- pytz=2021.1=pyhd8ed1ab_0
- r-acepack=1.4.1=r40h580db52_1006
- r-ada=2.0_5=r40_1002
- r-askpass=1.1=r40hcdcec82_2
- r-assertthat=0.2.1=r40h6115d3f_2
- r-backports=1.2.1=r40hcfec24a_0
- r-base=4.0.3=h8ff2632_7
- r-base64enc=0.1_3=r40hcdcec82_1004
- r-bh=1.75.0_0=r40hc72bb7e_0
- r-bibtex=0.4.2.3=r40hcdcec82_0
- r-biocmanager=1.30.12=r40hc72bb7e_0
- r-bit=4.0.4=r40hcdcec82_0
- r-bit64=4.0.5=r40hcdcec82_0
- r-bitops=1.0_7=r40hcfec24a_0
- r-blob=1.2.1=r40h6115d3f_1
- r-brio=1.1.2=r40hcfec24a_0
- r-cachem=1.0.4=r40hcfec24a_0
- r-callr=3.7.0=r40hc72bb7e_0
- r-checkmate=2.0.0=r40hcdcec82_1
- r-cli=2.5.0=r40hc72bb7e_0
- r-cluster=2.1.1=r40h859d828_0
- r-codetools=0.2_18=r40hc72bb7e_0
- r-colorspace=2.0_0=r40h9e2df91_0
- r-cowplot=1.1.1=r40hc72bb7e_0
- r-crayon=1.4.1=r40hc72bb7e_0
- r-curl=4.3=r40hcfec24a_1
- r-data.table=1.14.0=r40hcfec24a_0
- r-dbi=1.1.1=r40hc72bb7e_0
- r-dbplyr=2.1.1=r40hc72bb7e_0
- r-desc=1.3.0=r40hc72bb7e_0
- r-dichromat=2.0_0=r40_2002
- r-diffobj=0.3.3=r40hcfec24a_0
- r-digest=0.6.27=r40h1b71b39_0
- r-doparallel=1.0.16=r40h142f84f_0
- r-dplyr=1.0.5=r40h03ef668_0
- r-ellipsis=0.3.1=r40hcdcec82_0
- r-evaluate=0.14=r40h6115d3f_2
- r-fansi=0.4.2=r40hcfec24a_0
- r-farver=2.1.0=r40h03ef668_0
- r-fastmap=1.1.0=r40h03ef668_0
- r-forcats=0.5.1=r40hc72bb7e_0
- r-foreach=1.5.1=r40h142f84f_0
- r-foreign=0.8_81=r40hcfec24a_0
- r-formatr=1.9=r40hc72bb7e_0
- r-formula=1.2_4=r40h142f84f_0
- r-futile.logger=1.4.3=r40h6115d3f_1003
- r-futile.options=1.0.1=r40h6115d3f_1002
- r-generics=0.1.0=r40hc72bb7e_0
- r-ggalluvial=0.12.3=r40hc72bb7e_0
- r-ggally=2.1.1=r40hc72bb7e_0
- r-ggdendro=0.1.22=r40h6115d3f_0
- r-ggplot2=3.3.3=r40hc72bb7e_0
- r-glue=1.4.2=r40hcfec24a_0
- r-gridbase=0.4_7=r40h6115d3f_1003
- r-gridextra=2.3=r40h6115d3f_1003
- r-gtable=0.3.0=r40h6115d3f_3
- r-highr=0.9=r40hc72bb7e_0
- r-hmisc=4.5_0=r40h859d828_0
- r-hms=1.0.0=r40hc72bb7e_0
- r-htmltable=2.1.0=r40h6115d3f_0
- r-htmltools=0.5.1.1=r40h03ef668_0
- r-htmlwidgets=1.5.3=r40hc72bb7e_0
- r-httr=1.4.2=r40h6115d3f_0
- r-isoband=0.2.4=r40h03ef668_0
- r-iterators=1.0.13=r40h142f84f_0
- r-jpeg=0.1_8.1=r40hcdcec82_1
- r-jsonlite=1.7.2=r40hcfec24a_0
- r-knitr=1.31=r40hc72bb7e_0
- r-labeling=0.4.2=r40h142f84f_0
- r-lambda.r=1.2.4=r40h6115d3f_1
- r-lattice=0.20_41=r40hcfec24a_3
- r-latticeextra=0.6_29=r40h6115d3f_1
- r-lazyeval=0.2.2=r40hcdcec82_2
- r-lifecycle=1.0.0=r40hc72bb7e_0
- r-magrittr=2.0.1=r40hcfec24a_1
- r-markdown=1.1=r40hcfec24a_1
- r-mass=7.3_53.1=r40hcfec24a_0
- r-matrix=1.3_2=r40he454529_0
- r-matrixstats=0.58.0=r40hcfec24a_0
- r-memoise=2.0.0=r40hc72bb7e_0
- r-mgcv=1.8_34=r40he454529_0
- r-mime=0.10=r40hcfec24a_0
- r-munsell=0.5.0=r40h6115d3f_1003
- r-nlme=3.1_152=r40h859d828_0
- r-nmf=0.21.0=r40h0357c0b_1004
- r-nnet=7.3_15=r40hcfec24a_0
- r-openssl=1.4.3=r40he5c4762_0
- r-pillar=1.6.0=r40hc72bb7e_0
- r-pkgconfig=2.0.3=r40h6115d3f_1
- r-pkgload=1.2.1=r40h03ef668_0
- r-pkgmaker=0.32.2=r40h142f84f_0
- r-plogr=0.2.0=r40h6115d3f_1003
- r-plyr=1.8.6=r40h0357c0b_1
- r-png=0.1_7=r40hcdcec82_1004
- r-pracma=2.3.3=r40hc72bb7e_0
- r-praise=1.0.0=r40h6115d3f_1004
- r-prettyunits=1.1.1=r40h6115d3f_1
- r-processx=3.5.1=r40hcfec24a_0
- r-progress=1.2.2=r40h6115d3f_2
- r-proxy=0.4_25=r40hcfec24a_0
- r-ps=1.6.0=r40hcfec24a_0
- r-purrr=0.3.4=r40hcdcec82_1
- r-r6=2.5.0=r40hc72bb7e_0
- r-rappdirs=0.3.3=r40hcfec24a_0
- r-rcolorbrewer=1.1_2=r40h6115d3f_1003
- r-rcpp=1.0.6=r40h03ef668_0
- r-rcurl=1.98_1.3=r40hcfec24a_0
- r-registry=0.5_1=r40h6115d3f_2
- r-rematch2=2.1.2=r40h6115d3f_1
- r-reshape=0.8.8=r40hcdcec82_2
- r-reshape2=1.4.4=r40h0357c0b_1
- r-rlang=0.4.10=r40hcfec24a_0
- r-rngtools=1.5=r40h6115d3f_1
- r-rpart=4.1_15=r40hcfec24a_2
- r-rprojroot=2.0.2=r40hc72bb7e_0
- r-rsqlite=2.2.5=r40h03ef668_0
- r-rstudioapi=0.13=r40hc72bb7e_0
- r-scales=1.1.1=r40h6115d3f_0
- r-snow=0.4_3=r40h6115d3f_1002
- r-stringi=1.5.3=r40hcabe038_1
- r-stringr=1.4.0=r40h6115d3f_2
- r-survival=3.2_11=r40hcfec24a_0
- r-sys=3.4=r40hcdcec82_0
- r-testthat=3.0.2=r40h03ef668_0
- r-tibble=3.1.1=r40hcfec24a_0
- r-tidyr=1.1.3=r40h03ef668_0
- r-tidyselect=1.1.0=r40h6115d3f_0
- r-utf8=1.2.1=r40hcfec24a_0
- r-vctrs=0.3.7=r40hcfec24a_0
- r-viridis=0.6.0=r40hc72bb7e_0
- r-viridislite=0.4.0=r40hc72bb7e_0
- r-waldo=0.2.5=r40hc72bb7e_0
- r-withr=2.4.2=r40hc72bb7e_0
- r-xfun=0.20=r40hcfec24a_0
- r-xml=3.99_0.6=r40hcfec24a_0
- r-xml2=1.3.2=r40h0357c0b_1
- r-xtable=1.8_4=r40h6115d3f_3
- r-yaml=2.2.1=r40hcfec24a_1
- r-zeallot=0.1.0=r40h6115d3f_1002
- readline=8.0=he28a2e2_2
- samtools=1.10=h2e538c0_3
- scalpel=0.5.4=h7376a40_2
- scikit-learn=0.24.1=py38h658cfdd_0
- scipy=1.6.1=py38hb2138dd_0
- sed=4.8=he412f7d_0
- setuptools=49.6.0=py38h578d9bd_3
- six=1.15.0=pyh9f0ad1d_0
- somaticseq=3.6.2=py_0
- sqlite=3.35.2=h74cdb3f_0
- sysroot_linux-64=2.12=h77966d4_13
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=h21135ba_1
- tktable=2.10=hb7b940f_3
- vardict=2018.09.21=0
- varscan=2.4.4=0
- wheel=0.36.2=pyhd3deb0d_0
- xgboost=1.3.3=py38h578d9bd_2
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.0=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- cycler==0.10.0
- future==0.18.2
- kiwisolver==1.3.1
- matplotlib==3.4.1
- nimfa==1.4.0
- patsy==0.5.1
- pillow==8.2.0
- psutil==5.8.0
- pyparsing==2.4.7
- pypdf2==1.26.0
- reportlab==3.5.67
- seaborn==0.11.1
- sigprofilerextractor==1.1.0
- sigprofilermatrixgenerator==1.1.27
- sigprofilerplotting==1.1.15
- statsmodels==0.12.2
- torch==1.5.1
- xlrd==1.2.0
prefix: /users/maximilian.linde/.conda/envs/mySomaticSeq