diff --git a/algorithms/bruteforce_search.py b/algorithms/bruteforce_search.py index 1cbceab..8835f4d 100644 --- a/algorithms/bruteforce_search.py +++ b/algorithms/bruteforce_search.py @@ -5,7 +5,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/algorithms/global_topology.py b/algorithms/global_topology.py index 0fee630..b00fb7d 100644 --- a/algorithms/global_topology.py +++ b/algorithms/global_topology.py @@ -1,7 +1,7 @@ """ Compute several global topology metrics of a given graph """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/algorithms/greedy_optimization.py b/algorithms/greedy_optimization.py index f762615..b18e3d7 100644 --- a/algorithms/greedy_optimization.py +++ b/algorithms/greedy_optimization.py @@ -5,7 +5,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/algorithms/keyplayer.py b/algorithms/keyplayer.py index d2a2a71..10c20fa 100644 --- a/algorithms/keyplayer.py +++ b/algorithms/keyplayer.py @@ -2,7 +2,7 @@ https://doi.org/10.1007/s10588-006-7084-x""" __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/algorithms/local_topology.py b/algorithms/local_topology.py index 796474b..190689b 100644 --- a/algorithms/local_topology.py +++ b/algorithms/local_topology.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/algorithms/scalefree_inference.py b/algorithms/scalefree_inference.py index 8e74793..0f1f09d 100644 --- a/algorithms/scalefree_inference.py +++ b/algorithms/scalefree_inference.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/algorithms/shortest_path.py b/algorithms/shortest_path.py index 368d098..ce41072 100644 --- a/algorithms/shortest_path.py +++ b/algorithms/shortest_path.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Tommaso Mazza" diff --git a/algorithms/shortestpath_gpu.py b/algorithms/shortestpath_gpu.py index 9105330..a4d5d45 100644 --- a/algorithms/shortestpath_gpu.py +++ b/algorithms/shortestpath_gpu.py @@ -2,7 +2,7 @@ a NVIDIA-compliant GPU, if available""" __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Tommaso Mazza" diff --git a/algorithms/sparseness.py b/algorithms/sparseness.py index 4afe8a9..38518f1 100644 --- a/algorithms/sparseness.py +++ b/algorithms/sparseness.py @@ -7,7 +7,7 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/cmds/cmds_utils/kpsearch_wrapper.py b/cmds/cmds_utils/kpsearch_wrapper.py index f501504..3044ddb 100644 --- a/cmds/cmds_utils/kpsearch_wrapper.py +++ b/cmds/cmds_utils/kpsearch_wrapper.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/cmds/cmds_utils/plotter.py b/cmds/cmds_utils/plotter.py index 96ca609..33c038d 100644 --- a/cmds/cmds_utils/plotter.py +++ b/cmds/cmds_utils/plotter.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/cmds/cmds_utils/reporter.py b/cmds/cmds_utils/reporter.py index 2eacbf7..1ade710 100644 --- a/cmds/cmds_utils/reporter.py +++ b/cmds/cmds_utils/reporter.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/cmds/communities.py b/cmds/communities.py index eda81b4..7359b66 100644 --- a/cmds/communities.py +++ b/cmds/communities.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -48,9 +48,12 @@ def __init__(self, args): self.args.no_plot = True def run(self): - cursor = CursorAnimation() - cursor.daemon = True - cursor.start() + + if not self.args.suppress_cursor: + cursor = CursorAnimation() + cursor.daemon = True + cursor.start() + if not self.args.input_file: sys.stderr.write("ERROR: Input file is missing. Quitting\n") sys.exit(1) @@ -410,6 +413,8 @@ def run(self): sys.stdout.write( "Module {0} is above pyntacle Plotting limits ({1} nodes , we support 1000 nodes). Will skip plotting this module.\n".format( i, comm.vcount())) - cursor.stop() + if not self.args.suppress_cursor: + cursor.stop() + sys.stdout.write("Community Finding completed successfully. Ending\n") sys.exit(0) diff --git a/cmds/convert.py b/cmds/convert.py index 5cf877c..c799d8c 100644 --- a/cmds/convert.py +++ b/cmds/convert.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -32,7 +32,7 @@ class Convert(): """ - take input command line arguments in order to quickly convert one file format to another + take input network file and convert one file format to another (with several options attached) """ def __init__(self, args): self.logging = log @@ -40,9 +40,11 @@ def __init__(self, args): def run(self): # dictionary that stores the basename of the output file - cursor = CursorAnimation() - cursor.daemon = True - cursor.start() + if not self.args.suppress_cursor: + cursor = CursorAnimation() + cursor.daemon = True + cursor.start() + if self.args.no_header: header = False else: @@ -150,6 +152,8 @@ def run(self): os.path.abspath(self.args.input_file), output_path)) PyntacleExporter.Binary(graph, output_path) - cursor.stop() + if not self.args.suppress_cursor: + cursor.stop() + sys.stdout.write("{} converted successfully\n".format(os.path.basename(self.args.input_file))) sys.exit(0) diff --git a/cmds/generate.py b/cmds/generate.py index 0d749ca..077e77a 100644 --- a/cmds/generate.py +++ b/cmds/generate.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -42,9 +42,11 @@ def __init__(self, args): random.seed(self.args.seed) def run(self): - cursor = CursorAnimation() - cursor.daemon = True - cursor.start() + if not self.args.suppress_cursor: + cursor = CursorAnimation() + cursor.daemon = True + cursor.start() + if self.args.which == "random": if self.args.nodes is None: @@ -373,7 +375,10 @@ def run(self): "Graph ({} nodes) exceeds pyntacle limits for plotting (maximum 1000 nodes). Will not draw Graph".format( graph.vcount())) sys.exit(0) - cursor.stop() + + if not self.args.suppress_cursor: + cursor.stop() + sys.stdout.write("pyntacle Generate completed successfully. Ending\n") if self.args.repeat == 1: sys.exit(0) diff --git a/cmds/keyplayer.py b/cmds/keyplayer.py index 4525cb1..e5371ee 100644 --- a/cmds/keyplayer.py +++ b/cmds/keyplayer.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -50,9 +50,11 @@ def __init__(self, args): self.args.no_plot = True def run(self): - cursor = CursorAnimation() - cursor.daemon = True - cursor.start() + if not self.args.suppress_cursor: + cursor = CursorAnimation() + cursor.daemon = True + cursor.start() + if self.args.m_reach == None and self.args.type in ["pos", "all"]: raise Error("m reach distance must be provided") @@ -606,6 +608,8 @@ def run(self): elif graph.vcount() >= 1000: sys.stdout.write("The graph has too many nodes ({}). Can't draw graph\n".format(graph.vcount())) - cursor.stop() + if not self.args.suppress_cursor: + cursor.stop() + sys.stdout.write("pyntacle Keyplayer completed successfully. Ending\n") sys.exit(0) \ No newline at end of file diff --git a/cmds/metrics.py b/cmds/metrics.py index b580baf..4769193 100644 --- a/cmds/metrics.py +++ b/cmds/metrics.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -53,9 +53,10 @@ def __init__(self, args): self.args.no_plot = True def run(self): - cursor = CursorAnimation() - cursor.daemon = True - cursor.start() + if not self.args.suppress_cursor: + cursor = CursorAnimation() + cursor.daemon = True + cursor.start() if self.args.no_header: header = False else: @@ -473,6 +474,8 @@ def run(self): sys.stdout.write("Saving graph to a Binary file\n") PyntacleExporter.Binary(graph, binary_path) - cursor.stop() + if not self.args.suppress_cursor: + cursor.stop() + sys.stdout.write("pyntacle Metrics completed successfully. Ending\n") sys.exit(0) diff --git a/cmds/set.py b/cmds/set.py index fe35f7b..dcb4fc9 100644 --- a/cmds/set.py +++ b/cmds/set.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -53,10 +53,11 @@ def __init__(self, args): self.args.no_plot = True def run(self): - # process input files - cursor = CursorAnimation() - cursor.daemon = True - cursor.start() + + if not self.args.suppress_cursor: + cursor = CursorAnimation() + cursor.daemon = True + cursor.start() if not self.args.input_file_1 or not self.args.input_file_2: sys.stderr.write("ERROR: one of the two input files is missing. Quitting\n") sys.exit(1) @@ -436,6 +437,9 @@ def run(self): reporter1.report.extend(reporter2.report) reporter1.report.extend(reporter_final.report) reporter1.write_report(report_dir=self.args.directory, format=self.args.report_format) - cursor.stop() + + if not self.args.suppress_cursor: + cursor.stop() + sys.stdout.write("pyntacle Set completed successfully\n") sys.exit(0) diff --git a/config.py b/config.py index 5998b22..60412e0 100644 --- a/config.py +++ b/config.py @@ -1,5 +1,5 @@ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/generic_error.py b/exceptions/generic_error.py index 782986a..e278c3c 100644 --- a/exceptions/generic_error.py +++ b/exceptions/generic_error.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/illegal_argument_number_error.py b/exceptions/illegal_argument_number_error.py index c65a876..47f0751 100644 --- a/exceptions/illegal_argument_number_error.py +++ b/exceptions/illegal_argument_number_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/illegal_graph_size_error.py b/exceptions/illegal_graph_size_error.py index 30edcb1..51621f9 100644 --- a/exceptions/illegal_graph_size_error.py +++ b/exceptions/illegal_graph_size_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/illegal_kppset_size_error.py b/exceptions/illegal_kppset_size_error.py index d7a599b..d0d1e9a 100644 --- a/exceptions/illegal_kppset_size_error.py +++ b/exceptions/illegal_kppset_size_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/missing_attribute_error.py b/exceptions/missing_attribute_error.py index e3da913..3d14b19 100644 --- a/exceptions/missing_attribute_error.py +++ b/exceptions/missing_attribute_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/multiple_solutions_error.py b/exceptions/multiple_solutions_error.py index 650d2fa..5614f2b 100644 --- a/exceptions/multiple_solutions_error.py +++ b/exceptions/multiple_solutions_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/notagraph_error.py b/exceptions/notagraph_error.py index 69f93da..ee9a9b5 100644 --- a/exceptions/notagraph_error.py +++ b/exceptions/notagraph_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/unproperly_formatted_file_error.py b/exceptions/unproperly_formatted_file_error.py index f49dac5..4dab851 100644 --- a/exceptions/unproperly_formatted_file_error.py +++ b/exceptions/unproperly_formatted_file_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/unsupported_graph_error.py b/exceptions/unsupported_graph_error.py index 3773fe4..d454a72 100644 --- a/exceptions/unsupported_graph_error.py +++ b/exceptions/unsupported_graph_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/exceptions/wrong_argument_error.py b/exceptions/wrong_argument_error.py index 19e22df..7ad26c8 100644 --- a/exceptions/wrong_argument_error.py +++ b/exceptions/wrong_argument_error.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/graph_operations/modules_finder.py b/graph_operations/modules_finder.py index 1b1e850..dab9560 100644 --- a/graph_operations/modules_finder.py +++ b/graph_operations/modules_finder.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/graph_operations/set_operations.py b/graph_operations/set_operations.py index 1860c93..eeaed64 100644 --- a/graph_operations/set_operations.py +++ b/graph_operations/set_operations.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/io_stream/converter.py b/io_stream/converter.py index 13f679a..43cafd9 100644 --- a/io_stream/converter.py +++ b/io_stream/converter.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/io_stream/export_attributes.py b/io_stream/export_attributes.py index ef7883c..a242880 100644 --- a/io_stream/export_attributes.py +++ b/io_stream/export_attributes.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/io_stream/exporter.py b/io_stream/exporter.py index 924e98f..c948f0d 100644 --- a/io_stream/exporter.py +++ b/io_stream/exporter.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/io_stream/generator.py b/io_stream/generator.py index c5550a0..8e672bf 100644 --- a/io_stream/generator.py +++ b/io_stream/generator.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/io_stream/import_attributes.py b/io_stream/import_attributes.py index a90153b..2983858 100644 --- a/io_stream/import_attributes.py +++ b/io_stream/import_attributes.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/io_stream/importer.py b/io_stream/importer.py index 473c4b1..c03e516 100644 --- a/io_stream/importer.py +++ b/io_stream/importer.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/pyntacle.py b/pyntacle.py index 26964fc..6cc9a69 100755 --- a/pyntacle.py +++ b/pyntacle.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" @@ -122,7 +122,7 @@ def __init__(self): parser.add_argument('-v', action="count", help="Verbosity level of the internal Pyntacle logger. " "-vvv is the highest level (for debugging)") parser.add_argument('-V', "--version", action="version", version="pyntacle v0.2.3.1", - help="Shows program's version number and exits.") + help="Shows program version number and quits") # Detect verbosity for arg in sys.argv: @@ -245,9 +245,12 @@ def keyplayer(self): parser.add_argument("--save-binary", action="store_true", help="Save a binary file (with a .graph extension) that contains an igraph.Graph " "object. This object is the one processed by Pyntacle. ") + + parser.add_argument('--suppress-cursor', action="store_true", help="suppress Pyntacle animated cursor") parser.add_argument('-v', action="count", help="verbosity level of the internal Pyntacle logger. " "-vvv is the highest level (for debugging).") + subparsers = parser.add_subparsers(metavar='', help=argparse.SUPPRESS) @@ -386,6 +389,8 @@ def metrics(self): 'components or isolates. Will raise an error if the network has two largest' ' components of the same size.') + parser.add_argument('--suppress-cursor', metavar="", action="store_true", help="suppress Pyntacle animated cursor") + parser.add_argument('-v', action="count", help="Verbosity level of the internal Pyntacle logger. -vvv is the highest level" " (for debugging).") @@ -501,6 +506,8 @@ def convert(self): help="Specify a desired output separator for your output files. Default is “\t”." " Note: the separator must be specified in quotes.") + parser.add_argument('--suppress-cursor', metavar="", action="store_true", help="suppress Pyntacle animated cursor") + parser.add_argument('-v', action="count", help="Verbosity level of the internal Pyntacle logger. -vvv" " is the highest level (for debugging).") @@ -598,6 +605,8 @@ def generate(self): parser.add_argument("-R", "--repeat", metavar='', type=int, default=1, help="Specify the number of graphs that will be generated. Default is 1." " Note: --repeat overrides --seed.") + + parser.add_argument('--suppress-cursor', action="store_true", help="suppress Pyntacle animated cursor") parser.add_argument('-v', action="count", help="Verbosity level of the internal Pyntacle logger. -vvv" " is the highest level (for debugging).") @@ -820,6 +829,8 @@ def communities(self): ' contains small components or isolates. Will raise an error if the network' ' has two largest components of the same size.') + parser.add_argument('--suppress-cursor', action="store_true", help="suppress Pyntacle animated cursor") + parser.add_argument('-v', action="count", help="verbosity level. -vvv is the highest level") subparsers = parser.add_subparsers(metavar='', help=argparse.SUPPRESS) @@ -976,8 +987,6 @@ def set(self): "exist, we will create one at the specified path. Default is the present " "working directory.") - parser.add_argument('-v', action="count", help="verbosity level. -vvv is the highest level") - parser.add_argument('-P', '--plot-format', choices=["svg", "pdf", "png"], default="pdf", metavar='', type=lambda s: s.lower(), help="Use this option to specify the format of choice of the plots produced by " @@ -1036,6 +1045,9 @@ def set(self): "Pyntacle. Choices are “txt” and “tsv” for tab separated value files, “csv” " "for comma-separated value files, “xlsx” for Excel files. Default is “txt”.") + parser.add_argument('--suppress-cursor', action="store_true", help="suppress Pyntacle animated cursor") + + parser.add_argument('-v', action="count", help="verbosity level. -vvv is the highest level") subparsers = parser.add_subparsers(metavar='', help=argparse.SUPPRESS) diff --git a/pyntacletests/test_widgets_communities.py b/pyntacletests/test_widgets_communities.py index cb9327e..4682124 100644 --- a/pyntacletests/test_widgets_communities.py +++ b/pyntacletests/test_widgets_communities.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/pyntacletests/test_widgets_convert.py b/pyntacletests/test_widgets_convert.py index 64231b5..fe5a7bd 100644 --- a/pyntacletests/test_widgets_convert.py +++ b/pyntacletests/test_widgets_convert.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/pyntacletests/test_widgets_generator.py b/pyntacletests/test_widgets_generator.py index 4045dfe..4af7c15 100644 --- a/pyntacletests/test_widgets_generator.py +++ b/pyntacletests/test_widgets_generator.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/pyntacletests/test_widgets_keyplayer.py b/pyntacletests/test_widgets_keyplayer.py index 4e0ecdc..7c217ec 100644 --- a/pyntacletests/test_widgets_keyplayer.py +++ b/pyntacletests/test_widgets_keyplayer.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/pyntacletests/test_widgets_metrics.py b/pyntacletests/test_widgets_metrics.py index 3109ba0..eccf51c 100644 --- a/pyntacletests/test_widgets_metrics.py +++ b/pyntacletests/test_widgets_metrics.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/pyntacletests/test_widgets_setoperations.py b/pyntacletests/test_widgets_setoperations.py index 2a5276f..52bbdcc 100644 --- a/pyntacletests/test_widgets_setoperations.py +++ b/pyntacletests/test_widgets_setoperations.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/add_attributes.py b/tools/add_attributes.py index 9a19446..0dcbf34 100644 --- a/tools/add_attributes.py +++ b/tools/add_attributes.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/adjmatrix_utils.py b/tools/adjmatrix_utils.py index bf0fc01..46822fb 100644 --- a/tools/adjmatrix_utils.py +++ b/tools/adjmatrix_utils.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/edgelist_utils.py b/tools/edgelist_utils.py index a4b4a6c..a41e27e 100644 --- a/tools/edgelist_utils.py +++ b/tools/edgelist_utils.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/enums.py b/tools/enums.py index e565be8..d8f394e 100644 --- a/tools/enums.py +++ b/tools/enums.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.0.3" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/graph_utils.py b/tools/graph_utils.py index e1361dc..41bd8b2 100644 --- a/tools/graph_utils.py +++ b/tools/graph_utils.py @@ -3,7 +3,7 @@ """ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/binarycheck.py b/tools/misc/binarycheck.py index 3ebdfdc..035f389 100644 --- a/tools/misc/binarycheck.py +++ b/tools/misc/binarycheck.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/graph_load.py b/tools/misc/graph_load.py index f639fd2..a6b124e 100644 --- a/tools/misc/graph_load.py +++ b/tools/misc/graph_load.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/graph_routines.py b/tools/misc/graph_routines.py index 74cefdd..140bd5c 100644 --- a/tools/misc/graph_routines.py +++ b/tools/misc/graph_routines.py @@ -1,7 +1,7 @@ """Python decorators for consistency check of graph and graph's elements""" __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/io_utils.py b/tools/misc/io_utils.py index 0778773..8dd2c9b 100644 --- a/tools/misc/io_utils.py +++ b/tools/misc/io_utils.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/kpsearch_utils.py b/tools/misc/kpsearch_utils.py index 2d204f8..a62f7dd 100644 --- a/tools/misc/kpsearch_utils.py +++ b/tools/misc/kpsearch_utils.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/shortest_path_modifications.py b/tools/misc/shortest_path_modifications.py index 498558e..20d8b69 100644 --- a/tools/misc/shortest_path_modifications.py +++ b/tools/misc/shortest_path_modifications.py @@ -1,7 +1,7 @@ """ Utility methods to edit the shortest paths matrix""" __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/misc/timeit.py b/tools/misc/timeit.py index fc0261c..4c2eb8e 100644 --- a/tools/misc/timeit.py +++ b/tools/misc/timeit.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/modules_utils.py b/tools/modules_utils.py index ef59b07..ee102a6 100644 --- a/tools/modules_utils.py +++ b/tools/modules_utils.py @@ -1,5 +1,5 @@ __author__ = "Daniele Capocefalo, Mauro Truglio, Tommaso Mazza" -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo" diff --git a/tools/octopus.py b/tools/octopus.py index fe17b1c..e0f6852 100644 --- a/tools/octopus.py +++ b/tools/octopus.py @@ -3,7 +3,7 @@ """ __author__ = ["Daniele Capocefalo", "Mauro Truglio", "Tommaso Mazza"] -__copyright__ = "Copyright 2018, The pyntacle Project" +__copyright__ = "Copyright 2018, The Pyntacle Project" __credits__ = ["Ferenc Jordan"] __version__ = "0.2.3.1" __maintainer__ = "Daniele Capocefalo"