From 91db1768ed79b0c496e1f9a953d7ef2792a7103e Mon Sep 17 00:00:00 2001 From: Mike McCann Date: Thu, 18 Dec 2025 19:44:05 -0800 Subject: [PATCH 1/3] Cahnge fluo_bl_threshold to 0.2. --- src/data/resample.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/data/resample.py b/src/data/resample.py index b1cb6b9..3de0c4a 100755 --- a/src/data/resample.py +++ b/src/data/resample.py @@ -1415,7 +1415,7 @@ def correct_biolume_proxies( # noqa: C901, PLR0912, PLR0913, PLR0915 depth_threshold: float, adinos_threshold: float = 0.1, correction_threshold: int = 3, - fluo_bl_threshold: float = 0.4, + fluo_bl_threshold: float = 0.2, corr_type: str = "pearson", # "spearman" or "pearson" minutes_from_surface_threshold: int = 5, ) -> None: From 1916c750ee1c422d2362739bbf6d5036f9ba4233 Mon Sep 17 00:00:00 2001 From: Mike McCann Date: Thu, 18 Dec 2025 19:52:39 -0800 Subject: [PATCH 2/3] Update EXPECTED_MD5_GITHUB. --- src/data/test_process_dorado.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/data/test_process_dorado.py b/src/data/test_process_dorado.py index 5bfbb67..9f57d53 100644 --- a/src/data/test_process_dorado.py +++ b/src/data/test_process_dorado.py @@ -50,7 +50,7 @@ def test_process_dorado(complete_dorado_processing): check_md5 = True if check_md5: # Check that the MD5 hash has not changed - EXPECTED_MD5_GITHUB = "dec71d83f9d412544dcc5442a8ea4529" + EXPECTED_MD5_GITHUB = "5ac74c80e8a314d3e8e159974b8b98ab" EXPECTED_MD5_ACT = "136e130ac434494ab5eb52ff935a73b8" EXPECTED_MD5_LOCAL = "f17349e97d7ced5f01c7e92c6706c246" if str(proc.args.base_path).startswith("/home/runner"): From 583067f34b2d214267d52399c169d9d8be00d386 Mon Sep 17 00:00:00 2001 From: Mike McCann Date: Thu, 18 Dec 2025 20:00:33 -0800 Subject: [PATCH 3/3] Updtae EXPECTED_MD5_GITHUB. --- src/data/test_process_dorado.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/data/test_process_dorado.py b/src/data/test_process_dorado.py index 9f57d53..5bfbb67 100644 --- a/src/data/test_process_dorado.py +++ b/src/data/test_process_dorado.py @@ -50,7 +50,7 @@ def test_process_dorado(complete_dorado_processing): check_md5 = True if check_md5: # Check that the MD5 hash has not changed - EXPECTED_MD5_GITHUB = "5ac74c80e8a314d3e8e159974b8b98ab" + EXPECTED_MD5_GITHUB = "dec71d83f9d412544dcc5442a8ea4529" EXPECTED_MD5_ACT = "136e130ac434494ab5eb52ff935a73b8" EXPECTED_MD5_LOCAL = "f17349e97d7ced5f01c7e92c6706c246" if str(proc.args.base_path).startswith("/home/runner"):