From ea45b3eea49571154d6a19a7ceef75ab34de2ede Mon Sep 17 00:00:00 2001
From: Mike McCann <MBARIMike@gmail.com>
Date: Mon, 23 Jun 2025 12:39:40 -0700
Subject: [PATCH] Special fix for GoMx 2010.151.04 mission.

Copy from archive AUVCTD/missionnetcdfs/YYYY/YYYYJJJ the usbl.nc file.
---
 .vscode/launch.json   |  3 ++-
 src/data/calibrate.py | 18 ++++++++++++++++++
 2 files changed, 20 insertions(+), 1 deletion(-)

diff --git a/.vscode/launch.json b/.vscode/launch.json
index 7bc29cae..71db7357 100644
--- a/.vscode/launch.json
+++ b/.vscode/launch.json
@@ -270,7 +270,8 @@
             //"args": ["-v", "1", "--noinput", "--no_cleanup",  "--mission", "2020.337.00", "--clobber"]
             //"args": ["-v", "1", "--noinput", "--no_cleanup",  "--mission", "2008.010.10"]
             //"args": ["-v", "2", "--mission", "2004.029.03", "--noinput", "--no_cleanup"],
-            "args": ["-v", "1", "--mission", "2023.192.01", "--noinput", "--no_cleanup"],
+            //"args": ["-v", "1", "--mission", "2023.192.01", "--noinput", "--no_cleanup"],
+            "args": ["-v", "1", "--mission", "2010.151.04", "--noinput", "--no_cleanup", "--clobber"],
 
         },
         {
diff --git a/src/data/calibrate.py b/src/data/calibrate.py
index a5c113cb..704597e4 100755
--- a/src/data/calibrate.py
+++ b/src/data/calibrate.py
@@ -31,6 +31,7 @@
 import logging
 import os
 import shlex
+import shutil
 import subprocess
 import sys
 import time
@@ -1968,6 +1969,23 @@ def _gps_process(self, sensor):
                     self.args.mission,
                     "usbl.nc",
                 )
+                if not usbl_file.exists():
+                    # Copy from archive AUVCTD/missionnetcdfs/YYYY/YYYYJJJ the usbl.nc file
+                    from archive import AUVCTD_VOL
+
+                    year = self.args.mission.split(".")[0]
+                    YYYYJJJ = "".join(self.args.mission.split(".")[:2])
+                    missionnetcdfs_dir = Path(
+                        AUVCTD_VOL,
+                        MISSIONNETCDFS,
+                        year,
+                        YYYYJJJ,
+                        self.args.mission,
+                    )
+                    shutil.copyfile(
+                        Path(missionnetcdfs_dir, "usbl.nc"),
+                        usbl_file,
+                    )
                 self.logger.info(
                     "Just for the GoMx mission 2010.151.04 use data from %s "
                     "that came from the missionlogs/usbl.dat file",