SWRL to SPARQL Rules.txt

#This file has SWRL rules that were rewritten in SPARQL because Allegro doesn't support SWRL
#Mild and Very Mild Diagnosis:
#covid19:hasSymptom(?p, covid19:URTI) ^ covid19:hasSymptom(?p, covid19:Fever) ^ covid19:hasDiagnosis(?p, ?d) -> covid19:MildAndVeryMildCovid19(?d)

#Moderate:
#covid19:hasSymptom(?p, covid19:Pneumonia) ^ covid19:mostRecentTestResult(?p, ?tr) ^ covid19:respiratoryRate(?tr, ?r) ^ 
#swrlb:greaterThanOrEqual(?r, 15) ^ covid19:hasDiagnosis(?p, ?d) -> covid19:ModerateCovid19(?d)

#Severe:
#covid19:hasSymptom(?p, covid19:SeverePneumonia) ^ covid19:mostRecentTestResult(?p, ?tr) ^ covid19:SpO2(?tr, ?sp) ^ 
#covid19:respiratoryRate(?tr, ?r) ^ foaf:Person(?p) ^ covid19:hasDiagnosis(?p, ?d) ^ 
#swrlb:greaterThanOrEqual(?r, 30) ^ swrlb:greaterThanOrEqual(?sp, 90) -> covid19:SevereCovid19(?d)


INSERT {?d a codo:MildAndVeryMildCovid19.}
WHERE {?p a schema:Patient;
	codo:hasSymptom codo:URTI;
	codo:hasSymptom codo:Fever;
	codo:hasDiagnosis ?d.}

INSERT {?d a codo:ModerateCovid19.}
WHERE {?p a schema:Patient;
	codo:hasSymptom codo:Pneumonia;
	codo:mostRecentTestResult ?tr;
	codo:hasDiagnosis ?d.
	?tr codo:respiratoryRate ?r.
	FILTER(?r >= 15)
	}

INSERT {?d a codo:SevereCovid19.}
WHERE {?p a schema:Patient;
	codo:hasSymptom codo:SeverePneumonia;
	codo:mostRecentTestResult ?tr;
	codo:hasDiagnosis ?d.
	?tr codo:respiratoryRate ?r;
	codo:SpO2 ?sp.
	FILTER(?r >= 30 && ?sp >= 90)
	}
	
	
#List all patients who have a diagnosis	and mostRecentTestResult
SELECT ?p ?d ?tr
WHERE {?p codo:hasDiagnosis ?d;
		codo:mostRecentTestResult ?tr.}