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tagger.cpp
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//
// CRF++ -- Yet Another CRF toolkit
//
// $Id: tagger.cpp 1601 2007-03-31 09:47:18Z taku $;
//
// Copyright(C) 2005-2007 Taku Kudo <taku@chasen.org>
//
#include <iostream>
#include <vector>
#include <iterator>
#include <cmath>
#include <string>
#include <sstream>
#include "stream_wrapper.h"
#include "common.h"
#include "tagger.h"
namespace {
const char kUnknownError[] = "Unknown Error";
const size_t kErrorBufferSize = 256;
} // namespace
#if defined(_WIN32) && !defined(__CYGWIN__)
namespace {
DWORD g_tls_index = TLS_OUT_OF_INDEXES;
const char *getGlobalError() {
LPVOID data = ::TlsGetValue(g_tls_index);
return data == NULL ? kUnknownError : reinterpret_cast<const char *>(data);
}
void setGlobalError(const char *str) {
char *data = reinterpret_cast<char *>(::TlsGetValue(g_tls_index));
if (data == NULL) {
return;
}
strncpy(data, str, kErrorBufferSize - 1);
data[kErrorBufferSize - 1] = '\0';
}
} // namespace
HINSTANCE DllInstance = 0;
extern "C" {
BOOL WINAPI DllMain(HINSTANCE hinst, DWORD dwReason, LPVOID) {
LPVOID data = 0;
if (!DllInstance) {
DllInstance = hinst;
}
switch (dwReason) {
case DLL_PROCESS_ATTACH:
if ((g_tls_index = ::TlsAlloc()) == TLS_OUT_OF_INDEXES) {
return FALSE;
}
// Not break in order to initialize the TLS.
case DLL_THREAD_ATTACH:
data = (LPVOID)::LocalAlloc(LPTR, kErrorBufferSize);
if (data) {
::TlsSetValue(g_tls_index, data);
}
break;
case DLL_THREAD_DETACH:
data = ::TlsGetValue(g_tls_index);
if (data) {
::LocalFree((HLOCAL)data);
}
break;
case DLL_PROCESS_DETACH:
data = ::TlsGetValue(g_tls_index);
if (data) {
::LocalFree((HLOCAL)data);
}
::TlsFree(g_tls_index);
g_tls_index = TLS_OUT_OF_INDEXES;
break;
default:
break;
}
return TRUE;
}
}
#else // _WIN32
namespace {
#ifdef HAVE_TLS_KEYWORD
__thread char kErrorBuffer[kErrorBufferSize];
#else
char kErrorBuffer[kErrorBufferSize];
#endif
}
namespace {
const char *getGlobalError() {
return kErrorBuffer;
}
void setGlobalError(const char *str) {
strncpy(kErrorBuffer, str, kErrorBufferSize - 1);
kErrorBuffer[kErrorBufferSize - 1] = '\0';
}
} // namespace
#endif
namespace {
static const CRFPP::Option long_options[] = {
{"model", 'm', 0, "FILE", "set FILE for model file"},
{"nbest", 'n', "0", "INT", "output n-best results"},
{"verbose" , 'v', "0", "INT", "set INT for verbose level"},
{"cost-factor", 'c', "1.0", "FLOAT", "set cost factor"},
{"output", 'o', 0, "FILE", "use FILE as output file"},
{"version", 'v', 0, 0, "show the version and exit" },
{"help", 'h', 0, 0, "show this help and exit" },
{0, 0, 0, 0, 0}
};
} // namespace
namespace CRFPP {
Tagger *ModelImpl::createTagger() const {
if (!feature_index_.get()) {
return 0;
}
TaggerImpl *tagger = new TaggerImpl;
tagger->open(feature_index_.get(), nbest_, vlevel_);
return tagger;
}
bool TaggerImpl::open(FeatureIndex *feature_index,
Allocator *allocator) {
close();
mode_ = LEARN;
feature_index_ = feature_index;
allocator_ = allocator;
ysize_ = feature_index_->ysize();
return true;
}
bool TaggerImpl::open(FeatureIndex *feature_index,
unsigned int nbest,
unsigned int vlevel) {
close();
mode_ = TEST_SHARED;
feature_index_ = feature_index;
nbest_ = nbest;
vlevel_ = vlevel;
allocator_ = new Allocator;
ysize_ = feature_index_->ysize();
return true;
}
bool ModelImpl::openFromArray(const Param ¶m,
const char *buf,
size_t size) {
nbest_ = param.get<int>("nbest");
vlevel_ = param.get<int>("verbose");
feature_index_.reset(new DecoderFeatureIndex);
if (!feature_index_->openFromArray(buf, size)) {
WHAT << feature_index_->what();
feature_index_.reset(0);
return false;
}
const double c = param.get<double>("cost-factor");
feature_index_->set_cost_factor(c);
return true;
}
bool ModelImpl::open(const Param ¶m) {
nbest_ = param.get<int>("nbest");
vlevel_ = param.get<int>("verbose");
const std::string model = param.get<std::string>("model");
feature_index_.reset(new DecoderFeatureIndex);
if (!feature_index_->open(model.c_str())) {
WHAT << feature_index_->what();
feature_index_.reset(0);
return false;
}
const double c = param.get<double>("cost-factor");
feature_index_->set_cost_factor(c);
return true;
}
bool ModelImpl::open(int argc, char** argv) {
Param param;
CHECK_FALSE(param.open(argc, argv, long_options))
<< param.what();
return open(param);
}
bool ModelImpl::open(const char* arg) {
Param param;
CHECK_FALSE(param.open(arg, long_options)) << param.what();
return open(param);
}
bool ModelImpl::openFromArray(int argc, char** argv,
const char *buf, size_t size) {
Param param;
CHECK_FALSE(param.open(argc, argv, long_options))
<< param.what();
return openFromArray(param, buf, size);
}
bool ModelImpl::openFromArray(const char* arg,
const char *buf, size_t size) {
Param param;
CHECK_FALSE(param.open(arg, long_options)) << param.what();
return openFromArray(param, buf, size);
}
const char *ModelImpl::getTemplate() const {
if (feature_index_.get()) {
return feature_index_->getTemplate();
}
return 0;
}
bool TaggerImpl::open(const Param ¶m) {
close();
if (!param.help_version()) {
close();
return false;
}
nbest_ = param.get<int>("nbest");
vlevel_ = param.get<int>("verbose");
std::string model = param.get<std::string>("model");
DecoderFeatureIndex *decoder_feature_index = new DecoderFeatureIndex;
feature_index_ = decoder_feature_index;
allocator_ = new Allocator;
if (!decoder_feature_index->open(model.c_str())) {
WHAT << feature_index_->what();
close();
return false;
}
const double c = param.get<double>("cost-factor");
if (c <= 0.0) {
WHAT << "cost factor must be positive";
close();
return false;
}
feature_index_->set_cost_factor(c);
ysize_ = feature_index_->ysize();
return true;
}
bool TaggerImpl::open(int argc, char **argv) {
Param param;
CHECK_FALSE(param.open(argc, argv, long_options))
<< param.what();
return open(param);
}
bool TaggerImpl::open(const char *arg) {
Param param;
CHECK_FALSE(param.open(arg, long_options)) << param.what();
return open(param);
}
void TaggerImpl::close() {
if (mode_ == TEST) {
delete feature_index_;
delete allocator_;
feature_index_ = 0;
allocator_ = 0;
} else if (mode_ == TEST_SHARED) {
delete allocator_;
allocator_ = 0;
}
}
bool TaggerImpl::set_model(const Model &model) {
if (mode_ == TEST) {
// feature_index_ => took the owner
// allocator_ => reuse
delete feature_index_;
} else if (mode_ == LEARN) {
// feature_index_ => did not take the owner
// allocator_ => did not take the owner.
allocator_ = new Allocator;
} else if (mode_ == TEST_SHARED) {
// feature_index_ => did not take the owner
// allocator_ => reuse
}
mode_ = TEST_SHARED;
const ModelImpl *model_impl = static_cast<const ModelImpl *>(&model);
feature_index_ = model_impl->feature_index();
nbest_ = model_impl->nbest();
vlevel_ = model_impl->vlevel();
ysize_ = feature_index_->ysize();
return true;
}
bool TaggerImpl::add2(size_t size, const char **column, bool copy) {
const size_t xsize = feature_index_->xsize();
if ((mode_ == LEARN && size < xsize + 1) ||
((mode_ == TEST || mode_ == TEST_SHARED) && size < xsize)) {
CHECK_FALSE(false) << "# x is small: size="
<< size << " xsize=" << xsize;
}
size_t s = x_.size() + 1;
x_.resize(s);
node_.resize(s);
answer_.resize(s);
result_.resize(s);
s = x_.size() - 1;
if (copy) {
for (size_t k = 0; k < size; ++k) {
x_[s].push_back(allocator_->strdup(column[k]));
}
} else {
for (size_t k = 0; k < size; ++k) {
x_[s].push_back(column[k]);
}
}
result_[s] = answer_[s] = 0; // dummy
if (mode_ == LEARN) {
size_t r = ysize_;
for (size_t k = 0; k < ysize_; ++k) {
if (std::strcmp(yname(k), column[xsize]) == 0) {
r = k;
}
}
CHECK_FALSE(r != ysize_) << "cannot find answer: " << column[xsize];
answer_[s] = r;
}
node_[s].resize(ysize_);
return true;
}
bool TaggerImpl::add(size_t size, const char **column) {
return add2(size, column, true);
}
bool TaggerImpl::add(const char* line) {
char *p = allocator_->strdup(line);
scoped_fixed_array<const char *, 8192> column;
const size_t size = tokenize2(p, "\t ", column.get(), column.size());
if (!add2(size, column.get(), false)) {
return false;
}
return true;
}
bool TaggerImpl::read(std::istream *is) {
scoped_fixed_array<char, 8192> line;
clear();
for (;;) {
if (!is->getline(line.get(), line.size())) {
is->clear(std::ios::eofbit|std::ios::badbit);
return true;
}
if (line[0] == '\0' || line[0] == ' ' || line[0] == '\t') {
break;
}
if (!add(line.get())) {
return false;
}
}
return true;
}
void TaggerImpl::set_penalty(size_t i, size_t j, double penalty) {
if (penalty_.empty()) {
penalty_.resize(node_.size());
for (size_t s = 0; s < penalty_.size(); ++s) {
penalty_[s].resize(ysize_);
}
}
penalty_[i][j] = penalty;
}
double TaggerImpl::penalty(size_t i, size_t j) const {
return penalty_.empty() ? 0.0 : penalty_[i][j];
}
bool TaggerImpl::shrink() {
CHECK_FALSE(feature_index_->buildFeatures(this))
<< feature_index_->what();
std::vector<std::vector<const char *> >(x_).swap(x_);
std::vector<std::vector<Node *> >(node_).swap(node_);
std::vector<unsigned short int>(answer_).swap(answer_);
std::vector<unsigned short int>(result_).swap(result_);
return true;
}
bool TaggerImpl::initNbest() {
if (!agenda_.get()) {
agenda_.reset(new std::priority_queue <QueueElement*,
std::vector<QueueElement *>, QueueElementComp>);
nbest_freelist_.reset(new FreeList <QueueElement>(128));
}
nbest_freelist_->free();
while (!agenda_->empty()) {
agenda_->pop(); // make empty
}
const size_t k = x_.size()-1;
for (size_t i = 0; i < ysize_; ++i) {
QueueElement *eos = nbest_freelist_->alloc();
eos->node = node_[k][i];
eos->fx = -node_[k][i]->bestCost;
eos->gx = -node_[k][i]->cost;
eos->next = 0;
agenda_->push(eos);
}
return true;
}
bool TaggerImpl::next() {
while (!agenda_->empty()) {
QueueElement *top = agenda_->top();
agenda_->pop();
Node *rnode = top->node;
if (rnode->x == 0) {
for (QueueElement *n = top; n; n = n->next) {
result_[n->node->x] = n->node->y;
}
cost_ = top->gx;
return true;
}
for (const_Path_iterator it = rnode->lpath.begin();
it != rnode->lpath.end(); ++it) {
QueueElement *n =nbest_freelist_->alloc();
n->node = (*it)->lnode;
n->gx = -(*it)->lnode->cost -(*it)->cost + top->gx;
n->fx = -(*it)->lnode->bestCost -(*it)->cost + top->gx;
// | h(x) | | g(x) |
n->next = top;
agenda_->push(n);
}
}
return 0;
}
int TaggerImpl::eval() {
int err = 0;
for (size_t i = 0; i < x_.size(); ++i) {
if (answer_[i] != result_[i]) {
++err;
}
}
return err;
}
bool TaggerImpl::clear() {
if (mode_ == TEST || mode_ == TEST_SHARED) {
allocator_->clear();
}
x_.clear();
node_.clear();
answer_.clear();
result_.clear();
Z_ = cost_ = 0.0;
return true;
}
void TaggerImpl::buildLattice() {
if (x_.empty()) {
return;
}
feature_index_->rebuildFeatures(this);
for (size_t i = 0; i < x_.size(); ++i) {
for (size_t j = 0; j < ysize_; ++j) {
feature_index_->calcCost(node_[i][j]);
const std::vector<Path *> &lpath = node_[i][j]->lpath;
for (const_Path_iterator it = lpath.begin(); it != lpath.end(); ++it) {
feature_index_->calcCost(*it);
}
}
}
// Add penalty for Dual decomposition.
if (!penalty_.empty()) {
for (size_t i = 0; i < x_.size(); ++i) {
for (size_t j = 0; j < ysize_; ++j) {
node_[i][j]->cost += penalty_[i][j];
}
}
}
}
void TaggerImpl::forwardbackward() {
if (x_.empty()) {
return;
}
for (int i = 0; i < static_cast<int>(x_.size()); ++i) {
for (size_t j = 0; j < ysize_; ++j) {
node_[i][j]->calcAlpha();
}
}
for (int i = static_cast<int>(x_.size() - 1); i >= 0; --i) {
for (size_t j = 0; j < ysize_; ++j) {
node_[i][j]->calcBeta();
}
}
Z_ = 0.0;
for (size_t j = 0; j < ysize_; ++j) {
Z_ = logsumexp(Z_, node_[0][j]->beta, j == 0);
}
return;
}
void TaggerImpl::viterbi() {
for (size_t i = 0; i < x_.size(); ++i) {
for (size_t j = 0; j < ysize_; ++j) {
double bestc = -1e37;
Node *best = 0;
const std::vector<Path *> &lpath = node_[i][j]->lpath;
for (const_Path_iterator it = lpath.begin(); it != lpath.end(); ++it) {
double cost = (*it)->lnode->bestCost +(*it)->cost +
node_[i][j]->cost;
if (cost > bestc) {
bestc = cost;
best = (*it)->lnode;
}
}
node_[i][j]->prev = best;
node_[i][j]->bestCost = best ? bestc : node_[i][j]->cost;
}
}
double bestc = -1e37;
Node *best = 0;
size_t s = x_.size()-1;
for (size_t j = 0; j < ysize_; ++j) {
if (bestc < node_[s][j]->bestCost) {
best = node_[s][j];
bestc = node_[s][j]->bestCost;
}
}
for (Node *n = best; n; n = n->prev) {
result_[n->x] = n->y;
}
cost_ = -node_[x_.size()-1][result_[x_.size()-1]]->bestCost;
}
double TaggerImpl::gradient(double *expected) {
if (x_.empty()) return 0.0;
buildLattice();
forwardbackward();
double s = 0.0;
for (size_t i = 0; i < x_.size(); ++i) {
for (size_t j = 0; j < ysize_; ++j) {
node_[i][j]->calcExpectation(expected, Z_, ysize_);
}
}
for (size_t i = 0; i < x_.size(); ++i) {
for (const int *f = node_[i][answer_[i]]->fvector; *f != -1; ++f) {
--expected[*f + answer_[i]];
}
s += node_[i][answer_[i]]->cost; // UNIGRAM cost
const std::vector<Path *> &lpath = node_[i][answer_[i]]->lpath;
for (const_Path_iterator it = lpath.begin(); it != lpath.end(); ++it) {
if ((*it)->lnode->y == answer_[(*it)->lnode->x]) {
for (const int *f = (*it)->fvector; *f != -1; ++f) {
--expected[*f +(*it)->lnode->y * ysize_ +(*it)->rnode->y];
}
s += (*it)->cost; // BIGRAM COST
break;
}
}
}
viterbi(); // call for eval()
return Z_ - s ;
}
double TaggerImpl::collins(double *collins) {
if (x_.empty()) {
return 0.0;
}
buildLattice();
viterbi(); // call for finding argmax y*
double s = 0.0;
// if correct parse, do not run forward + backward
{
size_t num = 0;
for (size_t i = 0; i < x_.size(); ++i) {
if (answer_[i] == result_[i]) {
++num;
}
}
if (num == x_.size()) return 0.0;
}
for (size_t i = 0; i < x_.size(); ++i) {
// answer
{
s += node_[i][answer_[i]]->cost;
for (const int *f = node_[i][answer_[i]]->fvector; *f != -1; ++f) {
++collins[*f + answer_[i]];
}
const std::vector<Path *> &lpath = node_[i][answer_[i]]->lpath;
for (const_Path_iterator it = lpath.begin(); it != lpath.end(); ++it) {
if ((*it)->lnode->y == answer_[(*it)->lnode->x]) {
for (const int *f = (*it)->fvector; *f != -1; ++f) {
++collins[*f +(*it)->lnode->y * ysize_ +(*it)->rnode->y];
}
s += (*it)->cost;
break;
}
}
}
// result
{
s -= node_[i][result_[i]]->cost;
for (const int *f = node_[i][result_[i]]->fvector; *f != -1; ++f) {
--collins[*f + result_[i]];
}
const std::vector<Path *> &lpath = node_[i][result_[i]]->lpath;
for (const_Path_iterator it = lpath.begin(); it != lpath.end(); ++it) {
if ((*it)->lnode->y == result_[(*it)->lnode->x]) {
for (const int *f = (*it)->fvector; *f != -1; ++f) {
--collins[*f +(*it)->lnode->y * ysize_ +(*it)->rnode->y];
}
s -= (*it)->cost;
break;
}
}
}
}
return -s;
}
bool TaggerImpl::parse() {
CHECK_FALSE(feature_index_->buildFeatures(this))
<< feature_index_->what();
if (x_.empty()) {
return true;
}
buildLattice();
if (nbest_ || vlevel_ >= 1) {
forwardbackward();
}
viterbi();
if (nbest_) {
initNbest();
}
return true;
}
const char* TaggerImpl::parse(const char* input) {
return parse(input, std::strlen(input));
}
const char* TaggerImpl::parse(const char* input, size_t length) {
std::istringstream is(std::string(input, length));
if (!read(&is) || !parse()) {
return 0;
}
toString();
return os_.c_str();
}
const char* TaggerImpl::parse(const char*input, size_t len1,
char *output, size_t len2) {
std::istringstream is(std::string(input, len1));
if (x_.empty()) {
return 0;
}
toString();
if ((os_.size() + 1) < len2) {
memcpy(output, os_.data(), os_.size());
output[os_.size()] = '\0';
return output;
} else {
return 0;
}
}
bool TaggerImpl::parse_stream(std::istream *is,
std::ostream *os) {
if (!read(is) || !parse()) {
return false;
}
if (x_.empty()) {
return true;
}
toString();
os->write(os_.data(), os_.size());
return true;
}
const char* TaggerImpl::toString(char *output,
size_t len) {
const char* p = toString();
const size_t l = std::min(std::strlen(p), len);
std::strncpy(output, p, l);
return output;
}
const char* TaggerImpl::toString() {
os_.assign("");
#define PRINT \
for (size_t i = 0; i < x_.size(); ++i) { \
for (std::vector<const char*>::iterator it = x_[i].begin(); \
it != x_[i].end(); ++it) \
os_ << *it << '\t'; \
os_ << yname(y(i)); \
if (vlevel_ >= 1) os_ << '/' << prob(i); \
if (vlevel_ >= 2) { \
for (size_t j = 0; j < ysize_; ++j) \
os_ << '\t' << yname(j) << '/' << prob(i, j); \
} \
os_ << '\n'; \
} \
os_ << '\n';
if (nbest_ >= 1) {
for (size_t n = 0; n < nbest_; ++n) {
if (!next()) {
break;
}
os_ << "# " << n << ' ' << prob() << '\n';
PRINT;
}
} else {
if (vlevel_ >= 1) {
os_ << "# " << prob() << '\n';
}
PRINT;
}
return const_cast<const char*>(os_.c_str());
#undef PRINT
}
Tagger *createTagger(int argc, char **argv) {
TaggerImpl *tagger = new TaggerImpl();
if (!tagger->open(argc, argv)) {
setGlobalError(tagger->what());
delete tagger;
return 0;
}
return tagger;
}
Tagger *createTagger(const char *argv) {
TaggerImpl *tagger = new TaggerImpl();
if (!tagger->open(argv)) {
setGlobalError(tagger->what());
delete tagger;
return 0;
}
return tagger;
}
Model *createModel(int argc, char **argv) {
ModelImpl *model = new ModelImpl();
if (!model->open(argc, argv)) {
setGlobalError(model->what());
delete model;
return 0;
}
return model;
}
Model *createModelFromArray(int argc, char **argv,
const char *buf, size_t size) {
ModelImpl *model = new ModelImpl();
if (!model->openFromArray(argc, argv, buf, size)) {
setGlobalError(model->what());
delete model;
return 0;
}
return model;
}
Model *createModel(const char *argv) {
ModelImpl *model = new ModelImpl();
if (!model->open(argv)) {
setGlobalError(model->what());
delete model;
return 0;
}
return model;
}
Model *createModelFromArray(const char *arg,
const char *buf, size_t size) {
ModelImpl *model = new ModelImpl();
if (!model->openFromArray(arg, buf, size)) {
setGlobalError(model->what());
delete model;
return 0;
}
return model;
}
const char *getTaggerError() {
return getGlobalError();
}
const char *getLastError() {
return getGlobalError();
}
namespace {
int crfpp_test(const Param ¶m) {
if (param.get<bool>("version")) {
std::cout << param.version();
return -1;
}
if (param.get<bool>("help")) {
std::cout << param.help();
return -1;
}
CRFPP::TaggerImpl tagger;
if (!tagger.open(param)) {
std::cerr << tagger.what() << std::endl;
return -1;
}
std::string output = param.get<std::string>("output");
if (output.empty()) {
output = "-";
}
CRFPP::ostream_wrapper os(output.c_str());
if (!*os) {
std::cerr << "no such file or directory: " << output << std::endl;
return -1;
}
const std::vector<std::string>& rest_ = param.rest_args();
std::vector<std::string> rest = rest_; // trivial copy
if (rest.empty()) {
rest.push_back("-");
}
for (size_t i = 0; i < rest.size(); ++i) {
CRFPP::istream_wrapper is(rest[i].c_str());
if (!*is) {
std::cerr << "no such file or directory: " << rest[i] << std::endl;
return -1;
}
while (*is) {
tagger.parse_stream(is.get(), os.get());
}
}
return 0;
}
} // namepace
} // namespace CRFPP
int crfpp_test(int argc, char **argv) {
CRFPP::Param param;
param.open(argc, argv, long_options);
return CRFPP::crfpp_test(param);
}
int crfpp_test2(const char *arg) {
CRFPP::Param param;
param.open(arg, long_options);
return CRFPP::crfpp_test(param);
}