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environment.yml
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name: mincuttad
channels:
- jrhawley
- pyg
- anaconda
- pytorch
- bioconda
- defaults
- conda-forge
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.0=anacondar_1
- absl-py=0.13.0=py36h06a4308_0
- aiohttp=3.7.4.post0=py36h7f8727e_2
- argon2-cffi=20.1.0=py36h7b6447c_1
- async-timeout=3.0.1=py36h06a4308_0
- async_generator=1.10=py36h28b3542_0
- attrs=21.2.0=pyhd3eb1b0_0
- backcall=0.2.0=py_0
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_1
- bioconductor-annotationdbi=1.54.0=r41hdfd78af_0
- bioconductor-annotationfilter=1.16.0=r41hdfd78af_0
- bioconductor-biobase=2.52.0=r41hd029910_0
- bioconductor-biocfilecache=2.0.0=r41hdfd78af_0
- bioconductor-biocgenerics=0.38.0=r41hdfd78af_0
- bioconductor-biocio=1.2.0=r41hdfd78af_0
- bioconductor-biocparallel=1.26.0=r41h399db7b_0
- bioconductor-biomart=2.48.0=r41hdfd78af_0
- bioconductor-biostrings=2.60.0=r41hd029910_0
- bioconductor-biovizbase=1.40.0=r41hd029910_0
- bioconductor-bsgenome=1.60.0=r41hdfd78af_0
- bioconductor-cghbase=1.52.0=r41hdfd78af_0
- bioconductor-cghcall=2.54.0=r41hdfd78af_0
- bioconductor-delayedarray=0.18.0=r41hd029910_0
- bioconductor-dnacopy=1.66.0=r41hacda110_0
- bioconductor-ensembldb=2.16.0=r41hdfd78af_0
- bioconductor-genomeinfodb=1.28.0=r41hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.7=r41hdfd78af_1
- bioconductor-genomicalignments=1.28.0=r41hd029910_0
- bioconductor-genomicfeatures=1.44.0=r41hdfd78af_0
- bioconductor-genomicinteractions=1.26.0=r41hdfd78af_0
- bioconductor-genomicranges=1.44.0=r41hd029910_0
- bioconductor-gviz=1.36.1=r41hdfd78af_0
- bioconductor-hiccompare=1.14.0=r41hdfd78af_0
- bioconductor-hicdcplus=1.0.0=r41h399db7b_0
- bioconductor-impute=1.66.0=r41hacda110_0
- bioconductor-interactionset=1.20.0=r41h399db7b_0
- bioconductor-iranges=2.26.0=r41hd029910_0
- bioconductor-keggrest=1.32.0=r41hdfd78af_0
- bioconductor-limma=3.48.0=r41hd029910_0
- bioconductor-marray=1.70.0=r41hdfd78af_0
- bioconductor-matrixgenerics=1.4.0=r41hdfd78af_0
- bioconductor-precisetad=1.2.0=r41hdfd78af_0
- bioconductor-protgenerics=1.24.0=r41hdfd78af_0
- bioconductor-qdnaseq=1.28.0=r41hdfd78af_0
- bioconductor-rhdf5=2.36.0=r41h399db7b_0
- bioconductor-rhdf5filters=1.4.0=r41h399db7b_0
- bioconductor-rhdf5lib=1.14.0=r41hd029910_0
- bioconductor-rhtslib=1.24.0=r41hd029910_0
- bioconductor-rsamtools=2.8.0=r41h399db7b_0
- bioconductor-rtracklayer=1.52.0=r41hd029910_0
- bioconductor-s4vectors=0.30.0=r41hd029910_0
- bioconductor-spectraltad=1.8.0=r41hdfd78af_0
- bioconductor-summarizedexperiment=1.22.0=r41hdfd78af_0
- bioconductor-variantannotation=1.38.0=r41hd029910_0
- bioconductor-xvector=0.32.0=r41hd029910_0
- bioconductor-zlibbioc=1.38.0=r41hd029910_0
- blas=1.0=mkl
- blast=2.12.0=pl5262h3289130_0
- bleach=3.2.1=py_0
- blinker=1.4=py36h06a4308_0
- boto3=1.18.21=pyhd3eb1b0_0
- botocore=1.21.41=pyhd3eb1b0_1
- bravado=11.0.3=pyhd8ed1ab_0
- bravado-core=5.17.0=pyh9f0ad1d_0
- brotlipy=0.7.0=py36h27cfd23_1003
- bwa=0.7.17=h5bf99c6_8
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2021.10.8=ha878542_0
- cached-property=1.5.2=py_0
- cachetools=4.2.2=pyhd3eb1b0_0
- cairo=1.16.0=hf32fb01_1
- certifi=2020.6.20=pyhd3eb1b0_3
- cffi=1.14.6=py36hd8eec40_1
- chardet=4.0.0=py36h06a4308_1003
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.0.3=pyhd3eb1b0_0
- coreutils=8.31=h516909a_0
- coverage=5.5=py36h27cfd23_2
- cryptography=3.4.7=py36hd23ed53_0
- cudatoolkit=11.1.1=h6406543_9
- curl=7.80.0=h2574ce0_0
- cycler=0.10.0=py36_0
- cython=0.29.24=py36h295c915_0
- dataclasses=0.8=pyh4f3eec9_6
- dbus=1.13.18=hb2f20db_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- entrez-direct=16.2=he881be0_0
- entrypoints=0.3=py36_0
- expat=2.4.1=h2531618_2
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.13.1=hba837de_1005
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h7b6447c_0
- fsspec=2021.10.1=pyhd3eb1b0_0
- future=0.18.2=py36_1
- gcc_impl_linux-64=9.4.0=h03d3576_11
- gcc_linux-64=9.4.0=h391b98a_1
- gem3-mapper=3.6.1=h36cd882_9
- gettext=0.21.0=hf68c758_0
- gfortran_impl_linux-64=9.4.0=h0003116_11
- gfortran_linux-64=9.4.0=hf0ab688_1
- gitdb=4.0.7=pyhd3eb1b0_0
- gitpython=3.1.18=pyhd3eb1b0_1
- glib=2.70.1=h780b84a_0
- glib-tools=2.70.1=h780b84a_0
- gmp=6.2.1=h2531618_2
- google-auth=1.33.0=pyhd3eb1b0_0
- google-auth-oauthlib=0.4.1=py_2
- googledrivedownloader=0.4=pyhd3deb0d_1
- graphite2=1.3.14=h23475e2_0
- grpcio=1.36.1=py36h2157cd5_1
- gsl=2.7=he838d99_0
- gst-plugins-base=1.18.5=hc549b11_0
- gstreamer=1.18.5=ha1a6a79_0
- gxx_impl_linux-64=9.4.0=h03d3576_11
- gxx_linux-64=9.4.0=h0316aca_1
- h5py=3.1.0=nompi_py36hc1bc4f5_100
- harfbuzz=3.0.0=h83ec7ef_1
- hdf5=1.10.6=nompi_h6a2412b_1114
- hmmlearn=0.2.6=py36he33b4a0_0
- homer=4.11=pl5262h7d875b9_5
- htslib=1.14=h9093b5e_0
- icu=68.1=h2531618_0
- idna=3.2=pyhd3eb1b0_0
- idna_ssl=1.1.0=py36h06a4308_0
- importlib-metadata=4.8.1=py36h06a4308_0
- importlib_metadata=4.8.1=hd3eb1b0_0
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=5.3.4=py36h5ca1d4c_0
- ipython=7.16.1=py36h5ca1d4c_0
- ipython_genutils=0.2.0=py36_0
- ipywidgets=7.5.1=py_1
- jbig=2.1=hdba287a_0
- jedi=0.18.0=py36h06a4308_1
- jinja2=3.0.2=pyhd3eb1b0_0
- jmespath=0.10.0=pyhd3eb1b0_0
- joblib=0.13.2=py36_0
- jpeg=9d=h7f8727e_0
- jsonref=0.2=py_0
- jsonschema=3.2.0=pyhd3eb1b0_2
- jupyter=1.0.0=py36_7
- jupyter_client=6.1.7=py_0
- jupyter_console=6.2.0=py_0
- jupyter_core=4.6.3=py36_0
- jupyterlab_pygments=0.1.2=py_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- kiwisolver=1.3.1=py36h2531618_0
- krb5=1.19.2=hac12032_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=2.2.1=h2531618_0
- libblas=3.9.0=12_linux64_mkl
- libcblas=3.9.0=12_linux64_mkl
- libclang=11.1.0=default_ha53f305_1
- libcurl=7.80.0=h2574ce0_0
- libdeflate=1.7=h27cfd23_5
- libedit=3.1.20210216=h27cfd23_1
- libev=4.33=h7f8727e_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h295c915_2
- libgcc-devel_linux-64=9.4.0=hd854feb_11
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=11.2.0=h69a702a_11
- libgfortran5=11.2.0=h5c6108e_11
- libglib=2.70.1=h174f98d_0
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=12_linux64_mkl
- libllvm10=10.0.1=he513fc3_3
- libllvm11=11.1.0=h3826bc1_0
- libnghttp2=1.43.0=h812cca2_0
- libogg=1.3.5=h27cfd23_1
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.37=hbc83047_0
- libpq=13.3=hd57d9b9_3
- libprotobuf=3.17.2=h4ff587b_1
- libsanitizer=9.4.0=h79bfe98_11
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-devel_linux-64=9.4.0=hd854feb_11
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtiff=4.3.0=hf544144_1
- libuuid=2.32.1=h7f98852_1000
- libuv=1.40.0=h7b6447c_0
- libvorbis=1.3.7=h7b6447c_0
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h72842e0_0
- libzlib=1.2.11=h36c2ea0_1013
- littleutils=0.2.2=py_0
- llvmlite=0.34.0=py36hfa65bc7_2
- lz4-c=1.9.3=h295c915_1
- make=4.2.1=h1bed415_1
- markdown=3.3.4=py36h06a4308_0
- markupsafe=2.0.1=py36h27cfd23_0
- matplotlib=3.3.4=py36h5fab9bb_0
- matplotlib-base=3.3.4=py36h62a2d02_0
- mcl=14.137=pl5262h779adbc_6
- mistune=0.8.4=py36h7b6447c_0
- mkl=2021.4.0=h06a4308_640
- monotonic=1.5=py_0
- msgpack-python=1.0.2=py36hff7bd54_1
- multidict=5.1.0=py36h27cfd23_2
- mysql-common=8.0.27=ha770c72_1
- mysql-libs=8.0.27=hfa10184_1
- nbclient=0.5.1=py_0
- nbconvert=6.0.7=py36_0
- nbformat=5.0.8=py_0
- ncurses=6.2=he6710b0_1
- neptune-client=0.13.0=pyhd8ed1ab_0
- nest-asyncio=1.4.1=py_0
- networkx=2.5=py_0
- ninja=1.10.2=h5e70eb0_2
- notebook=6.1.4=py36_0
- nspr=4.32=h9c3ff4c_1
- nss=3.72=hb5efdd6_0
- numba=0.51.2=py36h7c3b610_0
- numpy=1.19.5=py36hfc0c790_2
- oauthlib=3.1.1=pyhd3eb1b0_0
- ogb=1.3.2=pyhd8ed1ab_0
- olefile=0.46=py36_0
- openssl=1.1.1l=h7f98852_0
- outdated=0.2.1=pyhd8ed1ab_0
- packaging=21.0=pyhd3eb1b0_0
- pandas=1.1.5=py36h284efc9_0
- pandoc=2.11=hb0f4dca_0
- pandocfilters=1.4.2=py36_1
- pango=1.48.10=h54213e6_2
- parso=0.8.0=py_0
- patsy=0.5.1=py36_0
- pcre=8.45=h295c915_0
- pcre2=10.37=h032f7d1_0
- perl=5.26.2=h14c3975_0
- perl-archive-tar=2.32=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-types-serialiser=1.0=pl526_2
- perl-xsloader=0.24=pl526_0
- pexpect=4.8.0=py36_0
- pickleshare=0.7.5=py36_0
- pillow=8.2.0=py36he98fc37_0
- pip=21.0.1=py36h06a4308_0
- pixman=0.40.0=h7f8727e_1
- prometheus_client=0.8.0=py_0
- prompt-toolkit=3.0.8=py_0
- prompt_toolkit=3.0.8=0
- protobuf=3.17.2=py36h295c915_0
- psutil=5.8.0=py36h27cfd23_1
- ptyprocess=0.6.0=py36_0
- pyasn1=0.4.8=pyhd3eb1b0_0
- pyasn1-modules=0.2.8=py_0
- pybigwig=0.3.18=py36h0c3496a_1
- pycparser=2.21=pyhd3eb1b0_0
- pydeprecate=0.3.1=pyhd8ed1ab_0
- pyfastx=0.8.4=py36h30a8e3e_0
- pyg=2.0.2=py36_torch_1.9.0_cu111
- pygments=2.7.1=py_0
- pygsp=0.5.1=py_0
- pyjwt=2.1.0=py36h06a4308_0
- pynndescent=0.5.5=pyh6c4a22f_0
- pyopenssl=21.0.0=pyhd3eb1b0_1
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyqt=5.12.3=py36h5fab9bb_7
- pyqt-impl=5.12.3=py36h7ec31b9_7
- pyqt5-sip=4.19.18=py36hc4f0c31_7
- pyqtchart=5.12=py36h7ec31b9_7
- pyqtwebengine=5.12.1=py36h7ec31b9_7
- pyrsistent=0.17.3=py36h7b6447c_0
- pysam=0.17.0=py36h61e5637_0
- pysocks=1.7.1=py36h06a4308_0
- python=3.6.13=hb7a2778_2_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-louvain=0.15=pyhd3eb1b0_0
- python_abi=3.6=2_cp36m
- pytorch=1.9.1=py3.6_cuda11.1_cudnn8.0.5_0
- pytorch-cluster=1.5.9=py36_torch_1.9.0_cu111
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- pytz=2021.3=pyhd3eb1b0_0
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- sed=4.8=h7b6447c_0
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- simplejson=3.8.1=py36_0
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- smmap=4.0.0=pyhd3eb1b0_0
- sqlite=3.36.0=hc218d9a_0
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- sysroot_linux-64=2.12=he073ed8_15
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- tadtree=0.1=py36_0
- tbb=2021.4.0=h4bd325d_1
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- xorg-libsm=1.2.3=hd9c2040_1000
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- zstd=1.5.0=ha4553b6_1
- pip:
- aggdraw==1.3.12
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- pytz-deprecation-shim==0.1.0.post0
- toolz==0.11.2
- tzdata==2021.5
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- venn==0.1.3