config.yaml

#------------------------------------------------------------
# Values for this lesson.
#------------------------------------------------------------

# Which carpentry is this (swc, dc, lc, or cp)? < REPLACED with UNIMELB institutes >
# uom: University of Melbourne
# mb: Melbourne Bioinformatics
# mig: Melbourne Integrative Genomics
# wehi: Walter and Eliza Hall Institute
carpentry: 'uom'

# Alt-text description of the lesson.
carpentry_description: 'Lesson Description'

# Overall title for pages.
title: 'Gene ontology analysis and integration for single-cell RNA-seq data'

# Date the lesson was created (YYYY-MM-DD, this is empty by default)
created: ~ # FIXME

# Comma-separated list of keywords for the lesson
keywords: 'software, data, lesson' # FIXME

# Life cycle stage of the lesson
# possible values: pre-alpha, alpha, beta, stable
life_cycle: 'pre-alpha' # FIXME

# License of the lesson
license: 'CC-BY 4.0'

# Link to the source repository for this lesson
source: 'https://github.com/melbournebioinformatics/seurat-de' # FIXME

# Default branch of your lesson
branch: 'main'

# Who to contact if there are any issues
contact: 'fixme@fixme.org' # FIXME

# Navigation ------------------------------------------------
#
# Use the following menu items to specify the order of
# individual pages in each dropdown section. Leave blank to
# include all pages in the folder.
#
# Example -------------
#
# episodes:
# - introduction.md
# - first-steps.md
#
# learners:
# - setup.md
#
# instructors:
# - instructor-notes.md
#
# profiles:
# - one-learner.md
# - another-learner.md

# Order of episodes in your lesson
episodes: 
- introduction.Rmd
- setup-quality-control-and-sample-integration.Rmd
- differential-gene-expression-when-dealing-with-two-treatment-conditions.Rmd
- differential-expression-using-a-pseudobulk-approach-and-deseq2.Rmd

# Information for Learners
learners:

# Information for Instructors
instructors:

# Learner Profiles
profiles:

# Customisation ---------------------------------------------
#
# This space below is where custom yaml items (e.g. pinning
# sandpaper and varnish versions) should live

# This is the MB varnish, which is a custom version of the Carpentries varnish
varnish: 'melbournebioinformatics/uom-varnish@main'
url: 'melbournebioinformatics.github.io/uom-varnish'