@@ -98,15 +98,14 @@ python SolidBin.py --contig_file /path/to/contigs.fasta --composition_profiles /
9898```
9999
100100## Using GraphBin2
101- You can see the usage options of GraphBin2 by typing ``` python graphbin2.py -h`` ` on the command line. For example,
101+ You can see the usage options of GraphBin2 by typing ` ./graphbin2 -h` on the command line. For example,
102102
103103```
104- python graphbin2.py -h
105- usage: graphbin2.py [-h] --assembler ASSEMBLER --graph GRAPH --contigs CONTIGS
106- [--paths PATHS] [--abundance ABUNDANCE] --binned BINNED
107- --output OUTPUT [--prefix PREFIX] [--depth DEPTH]
108- [--threshold THRESHOLD] [--delimiter DELIMITER]
109- [--nthreads NTHREADS]
104+ usage: graphbin2 [-h] --assembler ASSEMBLER --graph GRAPH --contigs CONTIGS
105+ [--paths PATHS] [--abundance ABUNDANCE] --binned BINNED
106+ --output OUTPUT [--prefix PREFIX] [--depth DEPTH]
107+ [--threshold THRESHOLD] [--delimiter DELIMITER]
108+ [--nthreads NTHREADS]
110109
111110GraphBin2 Help. GraphBin2 is a tool which refines the binning results obtained
112111from existing tools and, more importantly, is able to assign contigs to
@@ -134,8 +133,8 @@ optional arguments:
134133 [default: 1.5]
135134 --delimiter DELIMITER
136135 delimiter for input/output results. Supports a comma
137- (,), a semicolon (;), a tab ($'\t'), a space ( ) and a
138- pipe (|) [default: , (comma)]
136+ (,), a semicolon (;), a tab ($'\t'), a space (" " ) and
137+ a pipe (|) [default: , (comma)]
139138 --nthreads NTHREADS number of threads to use. [default: 8]
140139```
141140
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