SSE summarization

[barrettk]

This issue is for discussing all design decisions related to the summarization step documented in #737

• In the bootstrap, we compare the final parameter estimates of the based on model, to the bootstrap estimates:

  • 
  • However in SSE, we want to compare the initial (or "true") parameter estimates of the based on model, to the sse estimates.
  • What do we call this column? We have “original” for the bootstrap. Tyler suggested "true value"
  • Do we export a new version of param_estimates_compare for doing this, or just do this internally for printing the sse summary

• Does the information below capture everything we want, and in the format that we want? Note that run details, heuristics, and SSE specifications are also captured, just not printed below.

sse_sum$analysis_summary

> sse_sum$analysis_summary
# A tibble: 100 × 17
   absolute_model_path           run   error_msg termination_code THETA1 THETA2 THETA3  THETA4 THETA5 `SIGMA(1,1)` `OMEGA(1,1)` `OMEGA(2,1)` `OMEGA(2,2)`
   <chr>                         <chr> <lgl>                <dbl>  <dbl>  <dbl>  <dbl>   <dbl>  <dbl>        <dbl>        <dbl>        <dbl>        <dbl>
 1 /data/Projects/package_dev/b… 001   NA                       0   2.24  56.8   467.  -0.0787   4.14            1     0.0322              0       0.106 
 2 /data/Projects/package_dev/b… 002   NA                       0   2.23  55.2   439.  -0.0818   4.13            1     0.150               0       0.103 
 3 /data/Projects/package_dev/b… 003   NA                       0   2.26  53.8   410.  -0.0805   4.11            1     0.0343              0       0.142 
 4 /data/Projects/package_dev/b… 004   NA                       0  10.2    6.08   15.0 -0.0105   6.21            1     3.02                0      14.8   
 5 /data/Projects/package_dev/b… 005   NA                       0   2.32  55.4   423.  -0.0805   4.01            1     0.0937              0       0.301 
 6 /data/Projects/package_dev/b… 006   NA                       0   2.45  60.8   432.  -0.0910   4.65            1     0.000005            0       0.114 
 7 /data/Projects/package_dev/b… 007   NA                       0   2.15  56.5   446.  -0.0877   4.35            1     0.0633              0       0.102 
 8 /data/Projects/package_dev/b… 008   NA                     134   4.54  44.2    14.2 -0.0161   5.88            1     0.000005            0      13.3   
 9 /data/Projects/package_dev/b… 009   NA                       0   2.34  55.2   396.  -0.0819   4.03            1     0.116               0       0.0668
10 /data/Projects/package_dev/b… 010   NA                       0   2.33  56.4   457.  -0.0762   4.03            1     0.0488              0       0.234 
# ℹ 90 more rows
# ℹ 4 more variables: bbi_summary <list>, ofv <dbl>, condition_number <dbl>, any_heuristics <lgl>
# ℹ Use `print(n = ...)` to see more rows

sse_sum$parameter_estimates

> sse_sum$parameter_estimates
# A tibble: 900 × 10
   absolute_model_path                                    run   parameter_names estimate stderr random_effect_sd random_effect_sdse fixed diag  shrinkage
   <chr>                                                  <chr> <chr>              <dbl>  <dbl>            <dbl>              <dbl> <lgl> <lgl>     <dbl>
 1 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   THETA1            2.24       NA           NA                     NA FALSE NA           NA
 2 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   THETA2           56.8        NA           NA                     NA FALSE NA           NA
 3 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   THETA3          467.         NA           NA                     NA FALSE NA           NA
 4 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   THETA4           -0.0787     NA           NA                     NA FALSE NA           NA
 5 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   THETA5            4.14       NA           NA                     NA FALSE NA           NA
 6 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   OMEGA(1,1)        0.0322     NA            0.179                 NA FALSE TRUE         NA
 7 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   OMEGA(2,1)        0          NA            0                     NA TRUE  FALSE        NA
 8 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   OMEGA(2,2)        0.106      NA            0.325                 NA FALSE TRUE         NA
 9 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 001   SIGMA(1,1)        1          NA            1                     NA TRUE  TRUE         NA
10 /data/Projects/package_dev/bbr/inst/model/nonmem/basi… 002   THETA1            2.23       NA           NA                     NA FALSE NA           NA
# ℹ 890 more rows
# ℹ Use `print(n = ...)` to see more rows