From 2b3d4cc90c12ed546b0ca82472aec97f22962bce Mon Sep 17 00:00:00 2001 From: Nathaniel Thomas Date: Mon, 30 Sep 2024 00:35:14 -0700 Subject: [PATCH] Move to rye works --- requirements-dev.lock | 205 +----------------------------------------- requirements.lock | 199 +--------------------------------------- 2 files changed, 4 insertions(+), 400 deletions(-) diff --git a/requirements-dev.lock b/requirements-dev.lock index 02a0f3e..6c44cfb 100644 --- a/requirements-dev.lock +++ b/requirements-dev.lock @@ -5,307 +5,106 @@ # pre: false # features: [] # all-features: false -# with-sources: false -# generate-hashes: false -# universal: false -e file:. anndata==0.10.9 - # via doubletdetection - # via parafac2 - # via scanpy - # via spatialpf2 annoy==1.17.3 - # via pacmap array-api-compat==1.8 - # via anndata asttokens==2.4.1 - # via stack-data certifi==2024.8.30 - # via requests charset-normalizer==3.3.2 - # via requests click==8.1.7 - # via dask cloudpickle==3.0.0 - # via dask colorcet==3.1.0 - # via datashader comm==0.2.2 - # via ipywidgets contourpy==1.3.0 - # via matplotlib coverage==7.6.1 - # via pytest-cov cupy-cuda12x==13.3.0 - # via parafac2 cycler==0.12.1 - # via matplotlib dask==2024.9.0 - # via dask-expr - # via datashader - # via spatialpf2 dask-expr==1.1.14 - # via dask datashader==0.16.3 - # via spatialpf2 decorator==5.1.1 - # via ipython doubletdetection==4.2 - # via spatialpf2 executing==2.1.0 - # via stack-data fastrlock==0.8.2 - # via cupy-cuda12x fonttools==4.53.1 - # via matplotlib fsspec==2024.9.0 - # via dask h5py==3.11.0 - # via anndata - # via scanpy idna==3.10 - # via requests igraph==0.11.6 - # via leidenalg - # via louvain importlib-metadata==8.5.0 - # via dask iniconfig==2.0.0 - # via pytest ipython==8.27.0 - # via ipywidgets ipywidgets==8.1.5 - # via doubletdetection jedi==0.19.1 - # via ipython joblib==1.4.2 - # via pynndescent - # via scanpy - # via scikit-learn jupyterlab-widgets==3.0.13 - # via ipywidgets kiwisolver==1.4.7 - # via matplotlib legacy-api-wrap==1.4 - # via scanpy leidenalg==0.10.2 - # via doubletdetection - # via phenograph llvmlite==0.43.0 - # via numba - # via pynndescent locket==1.0.0 - # via partd louvain==0.8.2 - # via doubletdetection matplotlib==3.9.2 - # via doubletdetection - # via scanpy - # via seaborn - # via spatialpf2 - # via tlviz matplotlib-inline==0.1.7 - # via ipython multipledispatch==1.0.0 - # via datashader natsort==8.4.0 - # via anndata - # via scanpy networkx==3.3 - # via scanpy - # via spatialpf2 nodeenv==1.9.1 - # via pyright numba==0.60.0 - # via datashader - # via pacmap - # via pynndescent - # via scanpy - # via umap-learn numpy==1.26.4 - # via anndata - # via contourpy - # via cupy-cuda12x - # via dask - # via datashader - # via doubletdetection - # via h5py - # via matplotlib - # via numba - # via pacmap - # via pandas - # via parafac2 - # via patsy - # via phenograph - # via pyarrow - # via scanpy - # via scikit-learn - # via scipy - # via seaborn - # via spatialpf2 - # via statsmodels - # via tensorly - # via tlviz - # via umap-learn - # via xarray packaging==24.1 - # via anndata - # via dask - # via datashader - # via matplotlib - # via pytest - # via scanpy - # via statsmodels - # via xarray pacmap==0.7.3 - # via parafac2 - # via spatialpf2 pandas==2.2.2 - # via anndata - # via dask - # via dask-expr - # via datashader - # via doubletdetection - # via scanpy - # via seaborn - # via spatialpf2 - # via statsmodels - # via tlviz - # via xarray parafac2 @ git+https://github.com/meyer-lab/parafac2.git@793f8ad06791ffcc698105d80941774741722574 - # via spatialpf2 param==2.1.1 - # via datashader - # via pyct parso==0.8.4 - # via jedi partd==1.4.2 - # via dask patsy==0.5.6 - # via scanpy - # via statsmodels pexpect==4.9.0 - # via ipython phenograph==1.5.7 - # via doubletdetection pillow==10.4.0 - # via datashader - # via matplotlib pluggy==1.5.0 - # via pytest prompt-toolkit==3.0.47 - # via ipython psutil==6.0.0 - # via phenograph ptyprocess==0.7.0 - # via pexpect pure-eval==0.2.3 - # via stack-data pyarrow==17.0.0 - # via dask-expr pyct==0.5.0 - # via datashader pygments==2.18.0 - # via ipython pynndescent==0.5.13 - # via scanpy - # via umap-learn pyparsing==3.1.4 - # via matplotlib pyright==1.1.380 pytest==8.3.3 - # via pytest-cov pytest-cov==5.0.0 python-dateutil==2.9.0.post0 - # via matplotlib - # via pandas pytz==2024.2 - # via pandas pyyaml==6.0.2 - # via dask requests==2.32.3 - # via datashader - # via tlviz scanpy==1.10.2 - # via doubletdetection - # via spatialpf2 scikit-learn==1.5.2 - # via pacmap - # via parafac2 - # via phenograph - # via pynndescent - # via scanpy - # via spatialpf2 - # via umap-learn scipy==1.14.1 - # via anndata - # via datashader - # via doubletdetection - # via parafac2 - # via phenograph - # via pynndescent - # via scanpy - # via scikit-learn - # via statsmodels - # via tensorly - # via tlviz - # via umap-learn seaborn==0.13.2 - # via scanpy session-info==1.0.0 - # via scanpy -setuptools==75.1.0 - # via phenograph - # via spatialpf2 six==1.16.0 - # via asttokens - # via patsy - # via python-dateutil stack-data==0.6.3 - # via ipython statsmodels==0.14.3 - # via scanpy - # via tlviz stdlib-list==0.10.0 - # via session-info tensorly==0.8.1 - # via parafac2 - # via spatialpf2 texttable==1.7.0 - # via igraph threadpoolctl==3.5.0 - # via scikit-learn tlviz==0.1.1 - # via spatialpf2 toolz==0.12.1 - # via dask - # via datashader - # via partd tqdm==4.66.5 - # via doubletdetection - # via parafac2 - # via scanpy - # via umap-learn traitlets==5.14.3 - # via comm - # via ipython - # via ipywidgets - # via matplotlib-inline typing-extensions==4.12.2 - # via ipython tzdata==2024.1 - # via pandas umap-learn==0.5.6 - # via scanpy urllib3==2.2.3 - # via requests wcwidth==0.2.13 - # via prompt-toolkit widgetsnbextension==4.0.13 - # via ipywidgets xarray==2024.9.0 - # via datashader - # via tlviz zipp==3.20.2 - # via importlib-metadata +# The following packages are considered to be unsafe in a requirements file: +setuptools==75.1.0 diff --git a/requirements.lock b/requirements.lock index a70d000..35906cb 100644 --- a/requirements.lock +++ b/requirements.lock @@ -5,294 +5,99 @@ # pre: false # features: [] # all-features: false -# with-sources: false -# generate-hashes: false -# universal: false -e file:. anndata==0.10.9 - # via doubletdetection - # via parafac2 - # via scanpy - # via spatialpf2 annoy==1.17.3 - # via pacmap array-api-compat==1.8 - # via anndata asttokens==2.4.1 - # via stack-data certifi==2024.8.30 - # via requests charset-normalizer==3.3.2 - # via requests click==8.1.7 - # via dask cloudpickle==3.0.0 - # via dask colorcet==3.1.0 - # via datashader comm==0.2.2 - # via ipywidgets contourpy==1.3.0 - # via matplotlib cupy-cuda12x==13.3.0 - # via parafac2 cycler==0.12.1 - # via matplotlib dask==2024.9.0 - # via dask-expr - # via datashader - # via spatialpf2 dask-expr==1.1.14 - # via dask datashader==0.16.3 - # via spatialpf2 decorator==5.1.1 - # via ipython doubletdetection==4.2 - # via spatialpf2 executing==2.1.0 - # via stack-data fastrlock==0.8.2 - # via cupy-cuda12x fonttools==4.53.1 - # via matplotlib fsspec==2024.9.0 - # via dask h5py==3.11.0 - # via anndata - # via scanpy idna==3.10 - # via requests igraph==0.11.6 - # via leidenalg - # via louvain importlib-metadata==8.5.0 - # via dask ipython==8.27.0 - # via ipywidgets ipywidgets==8.1.5 - # via doubletdetection jedi==0.19.1 - # via ipython joblib==1.4.2 - # via pynndescent - # via scanpy - # via scikit-learn jupyterlab-widgets==3.0.13 - # via ipywidgets kiwisolver==1.4.7 - # via matplotlib legacy-api-wrap==1.4 - # via scanpy leidenalg==0.10.2 - # via doubletdetection - # via phenograph llvmlite==0.43.0 - # via numba - # via pynndescent locket==1.0.0 - # via partd louvain==0.8.2 - # via doubletdetection matplotlib==3.9.2 - # via doubletdetection - # via scanpy - # via seaborn - # via spatialpf2 - # via tlviz matplotlib-inline==0.1.7 - # via ipython multipledispatch==1.0.0 - # via datashader natsort==8.4.0 - # via anndata - # via scanpy networkx==3.3 - # via scanpy - # via spatialpf2 numba==0.60.0 - # via datashader - # via pacmap - # via pynndescent - # via scanpy - # via umap-learn numpy==1.26.4 - # via anndata - # via contourpy - # via cupy-cuda12x - # via dask - # via datashader - # via doubletdetection - # via h5py - # via matplotlib - # via numba - # via pacmap - # via pandas - # via parafac2 - # via patsy - # via phenograph - # via pyarrow - # via scanpy - # via scikit-learn - # via scipy - # via seaborn - # via spatialpf2 - # via statsmodels - # via tensorly - # via tlviz - # via umap-learn - # via xarray packaging==24.1 - # via anndata - # via dask - # via datashader - # via matplotlib - # via scanpy - # via statsmodels - # via xarray pacmap==0.7.3 - # via parafac2 - # via spatialpf2 pandas==2.2.2 - # via anndata - # via dask - # via dask-expr - # via datashader - # via doubletdetection - # via scanpy - # via seaborn - # via spatialpf2 - # via statsmodels - # via tlviz - # via xarray parafac2 @ git+https://github.com/meyer-lab/parafac2.git@793f8ad06791ffcc698105d80941774741722574 - # via spatialpf2 param==2.1.1 - # via datashader - # via pyct parso==0.8.4 - # via jedi partd==1.4.2 - # via dask patsy==0.5.6 - # via scanpy - # via statsmodels pexpect==4.9.0 - # via ipython phenograph==1.5.7 - # via doubletdetection pillow==10.4.0 - # via datashader - # via matplotlib prompt-toolkit==3.0.47 - # via ipython psutil==6.0.0 - # via phenograph ptyprocess==0.7.0 - # via pexpect pure-eval==0.2.3 - # via stack-data pyarrow==17.0.0 - # via dask-expr pyct==0.5.0 - # via datashader pygments==2.18.0 - # via ipython pynndescent==0.5.13 - # via scanpy - # via umap-learn pyparsing==3.1.4 - # via matplotlib python-dateutil==2.9.0.post0 - # via matplotlib - # via pandas pytz==2024.2 - # via pandas pyyaml==6.0.2 - # via dask requests==2.32.3 - # via datashader - # via tlviz scanpy==1.10.2 - # via doubletdetection - # via spatialpf2 scikit-learn==1.5.2 - # via pacmap - # via parafac2 - # via phenograph - # via pynndescent - # via scanpy - # via spatialpf2 - # via umap-learn scipy==1.14.1 - # via anndata - # via datashader - # via doubletdetection - # via parafac2 - # via phenograph - # via pynndescent - # via scanpy - # via scikit-learn - # via statsmodels - # via tensorly - # via tlviz - # via umap-learn seaborn==0.13.2 - # via scanpy session-info==1.0.0 - # via scanpy -setuptools==75.1.0 - # via phenograph - # via spatialpf2 six==1.16.0 - # via asttokens - # via patsy - # via python-dateutil stack-data==0.6.3 - # via ipython statsmodels==0.14.3 - # via scanpy - # via tlviz stdlib-list==0.10.0 - # via session-info tensorly==0.8.1 - # via parafac2 - # via spatialpf2 texttable==1.7.0 - # via igraph threadpoolctl==3.5.0 - # via scikit-learn tlviz==0.1.1 - # via spatialpf2 toolz==0.12.1 - # via dask - # via datashader - # via partd tqdm==4.66.5 - # via doubletdetection - # via parafac2 - # via scanpy - # via umap-learn traitlets==5.14.3 - # via comm - # via ipython - # via ipywidgets - # via matplotlib-inline typing-extensions==4.12.2 - # via ipython tzdata==2024.1 - # via pandas umap-learn==0.5.6 - # via scanpy urllib3==2.2.3 - # via requests wcwidth==0.2.13 - # via prompt-toolkit widgetsnbextension==4.0.13 - # via ipywidgets xarray==2024.9.0 - # via datashader - # via tlviz zipp==3.20.2 - # via importlib-metadata +# The following packages are considered to be unsafe in a requirements file: +setuptools==75.1.0