From 9ff9b4cfd4171a77723a27ea9ca89b052ae99761 Mon Sep 17 00:00:00 2001 From: Michael Levin Date: Thu, 9 May 2024 20:57:18 -0400 Subject: [PATCH] Updated default R library path for container-usage on Penn LPC --- inst/templates/.make-targets.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inst/templates/.make-targets.sh b/inst/templates/.make-targets.sh index 3185a62..6464124 100755 --- a/inst/templates/.make-targets.sh +++ b/inst/templates/.make-targets.sh @@ -31,7 +31,7 @@ if [[ -z "$num_cpus" ]]; then exit 1 fi -export R_LIBS_USER=${HOME}/R/rocker-rstudio/4.0 +export R_LIBS_USER=${HOME}/R/rocker-rstudio/bioconductor-tidyverse_3.17 export SINGULARITY_BIND="/project/PMBB/:/project/PMBB/, /scratch/:${HOME}/scratch/, /appl/:/appl/, /lsf/:/lsf/" export R_WORK_DIR=$(pwd)