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DESCRIPTION
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Package: seriation
Type: Package
Title: Infrastructure for Ordering Objects Using Seriation
Version: 1.5.7
Date: 2024-12-05
Authors@R: c(
person("Michael", "Hahsler", role = c("aut", "cre", "cph"),
email = "mhahsler@lyle.smu.edu",
comment = c(ORCID = "0000-0003-2716-1405")),
person("Christian", "Buchta", role = c("aut", "cph")),
person("Kurt", "Hornik", role = c("aut", "cph"),
comment = c(ORCID = "0000-0003-4198-9911")),
person("David", "Barnett", role = c("ctb")),
person("Michael", "Brusco", role = c("ctb", "cph")),
person("Michael", "Friendly", role = c("ctb")),
person("Hans-Friedrich", "Koehn", role = c("ctb", "cph")),
person("Fionn", "Murtagh", role = c("ctb", "cph")),
person("Stephanie", "Stahl", role = c("ctb", "cph")))
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Classification/ACM: G.1.6, G.2.1, G.4
URL: https://github.com/mhahsler/seriation
BugReports: https://github.com/mhahsler/seriation/issues
Depends: R (>= 2.14.0)
Imports: ca,
cluster,
colorspace,
foreach,
gclus,
grDevices,
grid,
MASS,
qap,
registry,
stats,
TSP,
vegan
Suggests: dbscan,
DendSer,
dendextend,
doParallel,
GA,
ggplot2,
keras,
Rtsne,
scales,
smacof,
tensorflow,
testthat,
umap
Encoding: UTF-8
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
License: GPL-3
Copyright: The code in src/bbwrcg.f, src/arsa.f and src/bburcg.f
are Copyright (C) 2005 M. Brusco, H.F. Koehn, and S. Stahl.
All other code is Copyright (C) Michael Hahsler, Christian Buchta,
and Kurt Hornik.
Collate:
'AAA_check_installed.R'
'AAA_color_palette.R'
'AAA_defaults.R'
'AAA_map.R'
'AAA_parameters.R'
'AAA_registry_criterion.R'
'AAA_registry_seriate.R'
'AAA_seriation-package.R'
'Chameleon.R'
'Irish.R'
'Munsingen.R'
'Psych24.R'
'SupremeCourt.R'
'Townships.R'
'VAT.R'
'Wood.R'
'Zoo.R'
'bertinplot.R'
'criterion.R'
'criterion.array.R'
'criterion.dist.R'
'criterion.matrix.R'
'dissplot.R'
'get_order.R'
'ggVAT.R'
'ggbertinplot.R'
'ggdissplot.R'
'hmap.R'
'gghmap.R'
'pimage.R'
'ggpimage.R'
'grid_helpers.R'
'lines_and_ordered_data.R'
'lle.R'
'permute.R'
'register_DendSer.R'
'register_GA.R'
'register_optics.R'
'register_smacof.R'
'register_tsne.R'
'register_umap.R'
'reorder.hclust.R'
'robinson.R'
'ser_dist.R'
'ser_permutation.R'
'ser_permutation_vector.R'
'ser_permutation_vector2matrix.R'
'seriate.R'
'seriate.dist.R'
'seriate.matrix.R'
'seriate.array.R'
'seriate.data.frame.R'
'seriate.table.R'
'seriate_AOE.R'
'seriate_ARSA_Branch-Bound.R'
'seriate_TSP.R'
'seriate_BEA.R'
'seriate_BK.R'
'seriate_CA.R'
'seriate_GSA.R'
'seriate_HC.R'
'seriate_LLE.R'
'seriate_MDS.R'
'seriate_Mean.R'
'seriate_PCA.R'
'seriate_QAP.R'
'seriate_R2E.R'
'seriate_SGD.R'
'seriate_SPIN.R'
'seriate_VAT.R'
'seriate_best.R'
'seriate_enumerate.R'
'seriate_heatmap.R'
'seriate_identity.R'
'seriate_random.R'
'seriate_reverse.R'
'seriate_spectral.R'
'seriate_vegan.R'
'uniscale.R'