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argument: -outputpath does not work as expected #5

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LYC-vio opened this issue Feb 8, 2023 · 1 comment
Open

argument: -outputpath does not work as expected #5

LYC-vio opened this issue Feb 8, 2023 · 1 comment

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@LYC-vio
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LYC-vio commented Feb 8, 2023

MAMnet use this to generate the output vcf name:

outputpath = bamfilepath.split('/')[-1][:-4] + '.vcf'

the argument -outputpath does not change the name of the output vcf name
@micahvista
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Dear LYC-vio:
Thanks to point out this problem, I have fixed the error in the latest version of MAMnet.
Thanks.
Hongyu Ding

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@micahvista @LYC-vio