From 44e090b78885bc70b37e599658735416e0b3226d Mon Sep 17 00:00:00 2001 From: DingHongyu <38337171+micahvista@users.noreply.github.com> Date: Tue, 1 Oct 2024 18:19:26 +0800 Subject: [PATCH] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index eca9db9..c06c7cc 100644 --- a/README.md +++ b/README.md @@ -16,12 +16,12 @@ Installation Usage ---------------------- - Map long genomic reads: + #Map long genomic reads: vacmap -ref /ref.fasta -read /read.fasta -mode S -t 8 | samtools sort -@4 > alignments.sorted.bam samtools index -@4 alignments.sorted.bam - Map assembly: + #Map assembly: vacmap -ref /ref.fasta -read /read.fasta -mode ams -t 8 -workdir /home/usr/workdir/ --H --fakecigar | samtools sort -@4 > alignments.sorted.bam samtools index -@4 alignments.sorted.bam @@ -34,7 +34,7 @@ Usage -ref The path of reference sequence. -read The path of long reads. - -t The number of threads to use. + -t The number of threads to use. (Note: In asm mode, using fewer threads results in lower memory usage.) -workdir For asm mode, store temporary data. If the folder not existexist, VACmap will create it automatically. Parameter