diff --git a/README.md b/README.md index b5a163d..b8d2172 100644 --- a/README.md +++ b/README.md @@ -35,7 +35,7 @@ Usage -mode H For aligning high error rate long read (Pacbio CLR, ONT). -mode L For aligning low error rate long read (Pacbio HiFi). -mode S Increase the sensitivity for small variants. (<100bp). (Pacbio CLR, ONT, HiFi). - -mode R Use a fixed value for the variation penalty that is more sensitive to translocation events, such as gene conversion. (Pacbio CLR, ONT, HiFi). + -mode R Use a fixed value for the variation penalty, more sensitive to translocation events, such as gene conversion. (Pacbio CLR, ONT, HiFi). -k k-mer size (no larger than 28, deflaut: 15) # set -k 19 -w 10 for HiFi data to reduce run time (2X faster) but there is very small decrease in accuracy.