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Effects of variants on asynchronous bolting in Arabidopsis using eQTL analysis.

Natural Sciences Interdisciplinary Project
Miguel Alburo


Installation

1. Download this project as zip and extract it. 2. Open project file `project.Rproj` in RStudio (or `setwd(path_to_proj_folder)` if you don't want to use Rproj files)

Description

Installation

1. Download this project as zip and extract it. 2. Open project file `project.Rproj` in RStudio (or `setwd(path_to_proj_folder)` if you don't want to use Rproj files)

Contents

List of directories and files along with a brief description.

  • `/data/`

The raw and processed/output data.

  • `/code/`

Collection of scripts for the data analysis and visualization.

  • 1_data_processing.R- Processing raw data from the supplementary materials into forms suitable for analyses.
  • 2_matrixeqtl.R- Performing eQTL analysis using MatrixEQTL
  • 3_volcano_plot- Volcano plot of differentially expressed genes caused by genetic variants.
  • 4_heatmap.R- Heatmap showing

  • `/test/`

Test scripts and outputs. Ignore.