diff --git a/flye/tests/ecoli_500kb.fasta b/flye/tests/data/ecoli_500kb.fasta similarity index 100% rename from flye/tests/ecoli_500kb.fasta rename to flye/tests/data/ecoli_500kb.fasta diff --git a/flye/tests/ecoli_500kb_reads.fastq.gz b/flye/tests/data/ecoli_500kb_reads.fastq.gz similarity index 100% rename from flye/tests/ecoli_500kb_reads.fastq.gz rename to flye/tests/data/ecoli_500kb_reads.fastq.gz diff --git a/flye/tests/test_toy.py b/flye/tests/test_toy.py old mode 100755 new mode 100644 index c2e1748e5..34eef4a7b --- a/flye/tests/test_toy.py +++ b/flye/tests/test_toy.py @@ -24,7 +24,7 @@ def test_toy(): print("Running toy test:\n") script_dir = os.path.dirname(os.path.realpath(__file__)) - reads_file = os.path.join(script_dir, "ecoli_500kb_reads.fastq.gz") + reads_file = os.path.join(script_dir, "data", "ecoli_500kb_reads.fastq.gz") out_dir = "flye_toy_test" subprocess.check_call(["flye", "--pacbio-raw", reads_file, "-g", "500k", "-o", out_dir, "-t", "8", "-m", "1000"]) diff --git a/setup.py b/setup.py index 55cb0cad9..536609f62 100644 --- a/setup.py +++ b/setup.py @@ -66,7 +66,7 @@ def run(self): setup(name='flye', version=__version__, - description='Fast and accurate de novo assembler for single molecule sequencing reads', + description='De novo assembler for single molecule sequencing reads using repeat graphs', url='https://github.com/fenderglass/Flye', author='Mikhail Kolmogorov', author_email = 'fenderglass@gmail.com', @@ -74,7 +74,7 @@ def run(self): packages=['flye', 'flye/assembly', 'flye/config', 'flye/polishing', 'flye/utils', 'flye/repeat_graph', 'flye/short_plasmids', 'flye/trestle', 'flye/tests'], - package_data={'flye': ['config/bin_cfg/*']}, + package_data={'flye': ['config/bin_cfg/*', 'tests/data/*']}, entry_points={'console_scripts': ['flye = flye.main:main']}, cmdclass={'build': MakeBuild, 'install' : MakeInstall}