diff --git a/README.md b/README.md index 5d16156f5..4169acad4 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ Flye assembler [![BioConda Install](https://img.shields.io/conda/dn/bioconda/flye.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/flye) -### Version: 2.5 +### Version: 2.6 Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. @@ -15,6 +15,10 @@ Flye also includes a special mode for metagenome assembly. Latest updates -------------- +Flye 2.6 release (19 Sep 2019) +============================== +* This release introduces Python 3 support (no other changes) + ### Flye 2.5 release (25 Jul 2019) * Better ONT polishing for the latest basecallers (Guppy/flipflop) * Improved consensus quality of repetitive regions diff --git a/docs/INSTALL.md b/docs/INSTALL.md index b42607044..77925502a 100644 --- a/docs/INSTALL.md +++ b/docs/INSTALL.md @@ -19,11 +19,11 @@ Alternatively, you can get a release version from the github releases page Building Requirements --------------------- +* Python 2.7 or 3.5+ (with setuptools package installed) * C++ compiler with C++11 support (GCC 4.8+ / Clang 3.3+ / Apple Clang 5.0+) * GNU make -* Python 2.7 or 3.4+ with setuptools package installed * Git -* Core OS development headers (zlib, etc) +* Core OS development headers (zlib, ...) Local building (without installation) @@ -38,10 +38,7 @@ To get and compile the latest git version, run: Then, Flye will be available as: - python3 bin/flye - -This example is using Python 3, replace ```python3``` -with ```python2``` to use the 2nd version. + python bin/flye Installing from source @@ -51,14 +48,16 @@ To install the Flye package into your system, run: git clone https://github.com/fenderglass/Flye cd Flye - python3 setup.py install + python setup.py install Depending on your OS, you might need to add ```--user``` or ```--prefix``` options to the install command for the local installation. -This example is using Python 3, replace ```python3``` -with ```python2``` to use the 2nd version. After installation, Flye could be invoked via: flye + +Optionally, run some tests to ensure that installation was successful: + + python flye/tests/test_toy.py diff --git a/docs/NEWS.md b/docs/NEWS.md index a86a5a84d..13595bbee 100644 --- a/docs/NEWS.md +++ b/docs/NEWS.md @@ -1,3 +1,7 @@ +Flye 2.6 release (19 Sep 2019) +============================== +* This release introduces Python 3 support (no other changes) + Flye 2.5 release (25 Jul 2019) ============================== * Better ONT polishing for the latest basecallers (Guppy/flipflop) diff --git a/flye/__version__.py b/flye/__version__.py index 5cdc0cdd7..1f682ab4c 100644 --- a/flye/__version__.py +++ b/flye/__version__.py @@ -1 +1 @@ -__version__ = "2.5" +__version__ = "2.6"