tlrc_results_indiv

#! /bin/bash

subjArr=('35' '43' '52' '56' '57' '58' '61' '62' '64' '65' '66' '67' '68' '69' '71' '72');
#subjArr=('62');

#condArr=('valaro' 'pleasint');
#condArr=('val' 'aro' 'pleas' 'int' 'conf' 'crav')
#condArr=('valXaro' 'pleasXint' 'meanvalpleas' 'meanaroint');
condArr=('valXaro' 'pleasXint' 'meanvalpleas' 'meanaroint' 'valaro' 'pleasint' 'val' 'aro' 'pleas' 'int' 'conf' 'crav');

for subj in ${subjArr[@]}; do
cd fixresp${subj}_retroicor

if [ ! -e anat+tlrc.BRIK ]
then
# tlrc warp anatomical:
@auto_tlrc -warp_orig_vol -suffix NONE -base '/home/grace/bin/tlrc/TT_N27+tlrc.' -input anat+orig.
fi

# tlrc warp beta coeffs, upsampling voxels
for cond in ${condArr[@]}; do
#if [ -e ${subj}smellepi_${cond}+tlrc.BRIK ]
#then
#rm -rf ${subj}smellepi_${cond}+tlrc.BRIK
#rm -rf ${subj}smellepi_${cond}+tlrc.HEAD
#fi

#@auto_tlrc -apar anat+tlrc -input ${subj}smellepi_${cond}+orig -dxyz 2

#reverse scored rating files used
if [ -e ${subj}smellepi_${cond}_rev+tlrc.BRIK ]
then
rm -rf ${subj}smellepi_${cond}_rev+tlrc.BRIK
rm -rf ${subj}smellepi_${cond}_rev+tlrc.HEAD
fi

@auto_tlrc -apar anat+tlrc -input ${subj}smellepi_${cond}_rev+orig -dxyz 2


# blur the data
#if [ -e ${subj}5mmblur_${cond}+tlrc.BRIK ]
#then
#rm -rf ${subj}5mmblur_${cond}+tlrc.BRIK
#rm -rf ${subj}5mmblur_${cond}+tlrc.HEAD
#fi

#3dmerge -1blur_fwhm 5 -doall -prefix ${subj}5mmblur_${cond} ${subj}smellepi_${cond}+tlrc

# reverse scored ratings
if [ -e ${subj}5mmblur_${cond}_rev+tlrc.BRIK ]
then
rm -rf ${subj}5mmblur_${cond}_rev+tlrc.BRIK
rm -rf ${subj}5mmblur_${cond}_rev+tlrc.HEAD
fi

3dmerge -1blur_fwhm 5 -doall -prefix ${subj}5mmblur_${cond}_rev ${subj}smellepi_${cond}_rev+tlrc

cp ${subj}5mmblur_${cond}+tlrc.* ../groupresults/
cp ${subj}5mmblur_${cond}_rev+tlrc.* ../groupresults/

done
cd ..
done