COVID-19 Healthcare Surge Model for Greater Toronto Area Hospitals

Click here to visit the shiny application!

Folder	Description
`src/`	The main source code powering the shiny application.
`paper/`	Contains the full R code of the model, input data, figures and the main manuscript text.
`reports/`	Contains the latest PDF versions of our reports to Unity Health Toronto Infection Prevention and Control (IPAC).
`data/`	Contains a timeseries (January 25 to June 7, 2020) of confirmed COVID-19 cases in the Greater Toronto Area, broken down by region.

Clone the repository and cd into the src directory.
Launch the R terminal with R and wait for renv to be installed.
Download the necessary packages by running renv::restore(). Warning: this may take a while!
Once all the packages are installed, run source('./scripts/run_shiny.R'). This will open a browser window with the shiny application.