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mxplore_environment.yaml
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name: mirexplore
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=2.0.0=pyhd8ed1ab_0
- ca-certificates=2024.2.2=hbcca054_0
- entrypoints=0.4=pyhd8ed1ab_0
- ipykernel=5.5.5=py36hcb3619a_0
- ipython=7.16.1=py36he448a4c_2
- ipython_genutils=0.2.0=py_1
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_core=4.8.1=py36h5fab9bb_0
- ld_impl_linux-64=2.40=h41732ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_5
- libgomp=13.2.0=h807b86a_5
- libnsl=2.0.1=hd590300_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.44.2=h2797004_0
- libstdcxx-ng=13.2.0=h7e041cc_5
- libzlib=1.2.13=hd590300_5
- ncurses=6.4=h59595ed_2
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- openssl=1.1.1w=hd590300_0
- pickleshare=0.7.5=py_1003
- pip=21.3.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.36=pyha770c72_0
- prompt_toolkit=3.0.36=hd8ed1ab_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pygments=2.14.0=pyhd8ed1ab_0
- python=3.6.15=hb7a2778_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.6=2_cp36m
- readline=8.2=h8228510_1
- simplegeneric=0.8.1=py_1
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.44.2=h2c6b66d_0
- tornado=6.1=py36h8f6f2f9_1
- traitlets=4.3.3=pyhd8ed1ab_2
- wheel=0.37.1=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zeromq=4.3.5=h59595ed_0
- pip:
- absl-py==1.4.0
- awscli==1.24.10
- biomart==0.9.2
- blis==0.4.1
- botocore==1.26.10
- cachetools==4.2.4
- certifi==2023.11.17
- charset-normalizer==2.0.12
- click==8.0.4
- colorama==0.4.4
- conllu==4.5.3
- cycler==0.11.0
- cymem==2.0.8
- decorator==4.4.2
- dill==0.3.4
- docutils==0.16
- docx==0.2.4
- et-xmlfile==1.1.0
- findspark==2.0.1
- flask==2.0.3
- flask-sqlalchemy==2.5.1
- google-auth==2.22.0
- google-pasta==0.2.0
- greenlet==2.0.2
- gtfparse==2.0.1
- idna==3.6
- importlib-resources==5.4.0
- intervaltree==3.1.0
- ipython-genutils==0.2.0
- itsdangerous==2.0.1
- jedi==0.17.2
- jinja2==3.0.3
- jmespath==0.10.0
- jupyter-core==4.9.2
- keras-preprocessing==1.1.2
- kiwisolver==1.3.1
- lxml==5.1.0
- markdown==3.3.7
- markupsafe==2.0.1
- matplotlib==3.3.4
- multiprocess==0.70.12.2
- murmurhash==1.0.10
- natsort==8.2.0
- nltk==3.6.7
- nmslib==2.1.1
- numpy==1.19.5
- openpyxl==3.1.2
- pandas==1.1.5
- parso==0.7.1
- pathos==0.2.8
- pexpect==4.9.0
- pillow==8.4.0
- plac==0.9.6
- polars==0.12.5
- pox==0.3.0
- ppft==1.6.6.4
- preshed==3.0.9
- protobuf==3.19.6
- psutil==5.9.8
- py4j==0.10.9.5
- pyahocorasick==2.0.0
- pyasn1==0.5.1
- pyasn1-modules==0.3.0
- pybind11==2.6.1
- pyparsing==3.1.1
- pysbd==0.3.4
- pyspark==3.2.4
- pytz==2024.1
- pyyaml==5.4.1
- pyzmq==25.1.2
- regex==2023.8.8
- requests==2.27.1
- rsa==4.7.2
- s3transfer==0.5.2
- scispacy==0.2.4
- setuptools==59.6.0
- sortedcontainers==2.4.0
- spacy==2.2.1
- sqlalchemy==1.4.51
- srsly==1.0.7
- termcolor==1.1.0
- thinc==7.1.1
- tk==0.1.0
- tqdm==4.64.1
- typing-extensions==4.1.1
- urllib3==1.26.18
- wasabi==0.10.1
- wcwidth==0.2.13
- wrapt==1.16.0
- xlrd==2.0.1
- zipp==3.6.0
prefix: /mnt/extproj/projekte/bartelt/software/miniconda3/envs/mirexplore