From 5b12cb6fcf89e77c1c9186cb371bbb73cda18273 Mon Sep 17 00:00:00 2001
From: mjoppich <github@mjoppich.net>
Date: Tue, 13 Oct 2020 11:10:44 +0200
Subject: [PATCH] pypi test

---
 .gitignore  |  5 ++++-
 .travis.yml |  2 +-
 MANIFEST.in |  2 +-
 README.md   | 26 ++++++++++----------------
 README.rst  | 30 ------------------------------
 setup.py    |  9 ++++++---
 upload.sh   |  6 ++++++
 7 files changed, 28 insertions(+), 52 deletions(-)
 delete mode 100644 README.rst
 create mode 100644 upload.sh

diff --git a/.gitignore b/.gitignore
index cc73412..c455485 100644
--- a/.gitignore
+++ b/.gitignore
@@ -17,4 +17,7 @@ examples/slided_test
 
 build
 dist
-pIMZ.egg-info
\ No newline at end of file
+pIMZ.egg-info
+
+docs/_build
+__pycache__
\ No newline at end of file
diff --git a/.travis.yml b/.travis.yml
index 98327d1..8216423 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -2,4 +2,4 @@ language: python
 python:
   - "3.8"
 script:
-  - python setup.py develop test
+  - python3 setup.py develop test
diff --git a/MANIFEST.in b/MANIFEST.in
index 0cd92ce..62e93f1 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,2 +1,2 @@
-include README.rst CHANGELOG.txt LICENSE.txt
+include README.md CHANGELOG.txt LICENSE.txt
 recursive-include pIMZ/tablefilter *
\ No newline at end of file
diff --git a/README.md b/README.md
index 82c1292..0b19bfc 100644
--- a/README.md
+++ b/README.md
@@ -1,18 +1,11 @@
----
-title: 'pIMZ: an integrative framework for imaging mass spectrometry analysis'
----
+# pIMZ: an integrative framework for imaging mass spectrometry analysis
 
-![image](https://readthedocs.org/projects/pimz/badge/?version=latest)
-
-target
-
-:   <https://pimz.readthedocs.io/en/latest/?badge=latest>
-
-alt
-
-:   Documentation Status
-
-[![image](https://travis-ci.org/mjoppich/pIMZ.svg?branch=master)](https://travis-ci.org/mjoppich/pIMZ)
+[![Documentation Status](https://readthedocs.org/projects/pimz/badge/?version=latest)](https://pimz.readthedocs.io/en/latest/?badge=latest)
+[![Build Status](https://travis-ci.org/mjoppich/pIMZ.svg?branch=master)](https://travis-ci.org/mjoppich/pIMZ)
+![PyPI](https://img.shields.io/pypi/v/pIMZ)
+![GitHub All Releases](https://img.shields.io/github/downloads/mjoppich/pIMZ/total)
+![PyPI - Python Version](https://img.shields.io/pypi/pyversions/pIMZ)
+![PyPI - License](https://img.shields.io/pypi/l/pIMZ)
 
 No idea what this framework does \...
 
@@ -32,11 +25,12 @@ format it properly.
 Installation
 ============
 
-The easiest way to install most Python packages is via `easy_install` or
-`pip`:
+The easiest way to install is via `pip`:
 
     $ sudo pip install pIMZ
     $ sudo pip3 install pIMZ
+    
+or on a user-level:
 
     $ pip install pIMZ --user
     $ pip3 install pIMZ --user
diff --git a/README.rst b/README.rst
deleted file mode 100644
index 758a2ee..0000000
--- a/README.rst
+++ /dev/null
@@ -1,30 +0,0 @@
-======================================================================
-pIMZ:  an integrative framework for imaging mass spectrometry analysis
-======================================================================
-
-.. image:: https://readthedocs.org/projects/pimz/badge/?version=latest
-:target: https://pimz.readthedocs.io/en/latest/?badge=latest
-:alt: Documentation Status
-
-.. image:: https://travis-ci.org/mjoppich/pIMZ.svg?branch=master
-    :target: https://travis-ci.org/mjoppich/pIMZ
-
-No idea what this framework does ...
-
-... it's not yet ready. But once it is, you will get to know a lot more here!
-
-This is a "long description" file for the package that you are creating.
-If you submit your package to PyPi, this text will be presented on the `public page <http://pypi.python.org/pypi/python_package_boilerplate>`_ of your package.
-
-Note: This README has to be written using `reStructured Text <http://docutils.sourceforge.net/rst.html>`_, otherwise PyPi won't format it properly.
-
-Installation
-------------
-
-The easiest way to install most Python packages is via ``easy_install`` or ``pip``::
-
-    $ sudo pip install pIMZ
-    $ sudo pip3 install pIMZ
-
-    $ pip install pIMZ --user
-    $ pip3 install pIMZ --user
diff --git a/setup.py b/setup.py
index 8871a1c..72f000f 100644
--- a/setup.py
+++ b/setup.py
@@ -41,19 +41,22 @@ def run_tests(self):
                       
                       )
 
-version = "1.0"
+version = "1.0a"
 import pathlib
 
 
 setup(name="pIMZ",
       version=version,
       description="pIMZ: an integrative framework for imaging mass spectrometry analysis",
-      long_description=open("README.rst").read(),
+      long_description=open("README.md").read(),
+      long_description_content_type='text/markdown',
       classifiers=[ # Get strings from http://pypi.python.org/pypi?%3Aaction=list_classifiers
         'Development Status :: 3 - Alpha',
         'Intended Audience :: Developers',
         'Programming Language :: Python',
-        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3 :: Only',
+        'Programming Language :: Python :: 3.8',
+        'Programming Language :: Python :: 3.9',
         'Topic :: Scientific/Engineering :: Bio-Informatics',
         'Topic :: Scientific/Engineering :: Medical Science Apps.'
       ],
diff --git a/upload.sh b/upload.sh
new file mode 100644
index 0000000..58a78a1
--- /dev/null
+++ b/upload.sh
@@ -0,0 +1,6 @@
+#python3 setup.py register sdist upload
+
+rm -rf dist
+python setup.py sdist
+twine upload -r testpypi dist/*
+#twine upload dist/*
\ No newline at end of file