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docs/install.rst

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@@ -94,8 +94,8 @@ You will be asked to enter your *WSL* password when you submit your first *sudo*
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The following will explain the packages and software going to be installed. Since you provided your *sudo*-password, you should get to know what we are doing ;) If you are not interested: congratulations, you're done!
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First a basic developer package has to be installed, which is done by installing *git* for version control/access to repositories, *build-essential* to get C/C++ compilers (to build other software) and python3 for generating reads from fast5 files and making the statistics.
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*python3-pip* is the python package manager which we need to install some python packages, and finally libhdf5 is needed to access fast5 files. For alignment of the reads we rely on `mappy/minimap2 <https://pypi.org/project/mappy/>`_ .
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First a basic developer package has to be installed, which is done by installing *git* for version control/access to repositories, *build-essential* to get C/C++ compilers (to build other software) and python3 for running the online-/incremental algorithm, generating reads from fast5 files and making the statistics.
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*python3-pip* is the python package manager which is need to install further python packages. Finally libhdf5, hdf5-tools and h5py are needed to access fast5 files. For alignment of the reads we rely on `mappy/minimap2 <https://pypi.org/project/mappy/>`_ . matplotlib and upsetplot is needed to prepare plots. pandas is used to prepare data for the plots and flask is used to run the server for the incremental updates.
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After you have completed these steps, you are ready to use sequ-into!
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