CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

See GitHub releases.

Unreleased

v5.11.0

Added

• Allow int parts in StringUtil::joinNonEmpty

v5.10.0

Added

• Support creating Lightcycler Sample Sheets for Relative Quantification

v5.9.0

Added

• Add class MLL\Utils\Specification for logical combinations of predicates

v5.8.0

Added

• Add PHPStan-Rule MLL\Utils\PHPStan\Rules\ThrowableClassNameRule

v5.7.0

Added

• Add PHPStan-Rule MLL\Utils\PHPStan\Rules\VariableNameIdToIDRule

v5.6.0

Added

• Improve code quality with automatic type declarations via Rector
• Improve code quality with automatic rector rules for PHPUnit

v5.5.2

Fixed

• Changed coordinate system for MLL\Utils\Tecan\Rack\MasterMixRack

v5.5.1

Fixed

• Fix generic inference for MLL\Utils\Microplate\Coordinates::fromPosition()

v5.5.0

Added

• Add scalar Column6

v5.4.0

Added

• Add command SetDiTiType to tecan worklist

v5.3.0

Added

• Add methods CoordinateSystem::equals() and Coordinates::equals()
• Add coordinate system CoordinateSystem6x8
• Add method CoordinateSystem::fromArray()

v5.2.0

Added

• Add coordinate systems CoordinateSystem4x3, CoordinateSystem8x6 and CoordinateSystem12x8

Changed

• Deprecate coordinate systems CoordinateSystem12Well, CoordinateSytem48Well and CoordinateSystem96Well

v5.1.0

Added

• Racks are connected to a CoordinateSystem

v5.0.0

Added

• Add coordinate system CoordinateSystem2x16

Changed

• Breaking Change: Renamed class Column96Well to Column12
• Breaking Change: Renamed class Row96Well to Row8

v4.1.0

Added

• Add generics to BaseRack and its children

v4.0.0

Added

• Add specific class for each MLLLabWareRack-type that includes a positions-Collection

Changed

• Breaking Change: Delete class MLLLabWareRack
• Breaking Change: Delete class CustomRack
• Breaking Change: Add method positionCount to interface Rack
• Breaking Change: Limit the usage of BarcodeLocation to objects implementing ScannedRack

v3.2.0

Added

• Support nesbot/carbon 3

v3.1.0

Changed

• Add optional column Project to Illumina Sample Sheets (V2) for NovaSeq

v3.0.0

Changed

• All OverrideCycle total counts on DataSection must grow to the ReadsSection maximum value by adding the N-tag
• Throw when trying to use an empty DataSection
• Breaking Change: class OverrideCycles requires class DataSection to calculate the max cycles

Fixed

• Use method maxRead2Cycles for calculating $fillUpToMax for read2, not maxRead1Cycles

v2.2.0

Added

• Add class DnaSequence

v2.1.0

Added

• Support creating Illumina Sample Sheets (V1) for NovaSeq

v2.0.0

Changed

• Generate the Reads-Sections dynamically from the OverrideCycles-part of the Samples-Section for Illumina NovaSeq Sample Sheets (V2)
• OverrideCycles on BclSample not nullable

v1.14.0

Added

• Support creating Illumina NovaSeq Sample Sheets (V2) for NovaSeqX

v1.13.0

Added

• Integrate mll-lab/microplate and mll-lab/liquid-handling-robotics
• Support Laravel 11

v1.12.0

Added

• Add StringUtil::toUTF8()

v1.11.0

Added

• Integrate mll-lab/holidays

v1.10.0

Added

• Allow custom line separator in CSVArray::toCSV()

v1.9.0

Added

• Add StringUtil::joinNonEmpty()

v1.8.1

Changed

• Exclude NoAssignmentInIfRule by default

v1.8.0

Added

• Add PHPStan extension with NoAssignmentInIfRule

v1.7.0

Added

• Add QxManagerSampleSheet::toCsvString(...)

v1.6.1

Fixed

• CSVArray::toArray() returns array<int, array<string, string>>

v1.6.0

Added

• Support illuminate/support:^10

v1.5.0

Added

• Support thecodingmachine/safe:^2

v1.4.0

Added

• Add Number::clamp()

v1.3.0

Added

• Add parameters $enclosure and $escape to CSVArray::toArray

v1.2.0

Added

• Support illuminate/support version 9

v1.1.1

Fixed

• Fix errors in composer.lock

v1.1.0

Added

• Add CSVArray

v1.0.0

Added

• Add StringUtil