rp19.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import nglview\n",
    "import rna_pdb_tools.Seq as Seq\n",
    "import rna_pdb_tools.BlastPDB\n",
    "from rna_pdb_tools.BlastPDB import BlastPDB\n",
    "reload(rna_pdb_tools.BlastPDB);\n",
    "reload(Seq);\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 49,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "seq = Seq.Seq(\"GGGGCGCGGCGCUCAUUCCUGCGCAAGCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCC\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 50,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "GGGGCGCGGCGCUCAUUCCUGCGCAAGCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCC"
      ]
     },
     "execution_count": 50,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "seq"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Secondary structure prediction"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 51,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "((((((.((.(((...((((((....))))))...))))).((((((.......))))))))))))\n"
     ]
    }
   ],
   "source": [
    "print seq.predict_ss()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 52,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "GGGGCGCGGCGCUCAUUCCUGCGCAAGCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCC  -3490    100\n",
      "(((((((.((((........))))..)).((((...)))).((((((.......)))))).))))) -34.40\n",
      "(((((((.((((........))))..)).((((...)))).((((((.(....))))))).))))) -34.40\n",
      "((((((.((.(((...((((((....))))))...))))).(((((((....)).))))))))))) -33.90\n",
      "((((((.((.(((...((((((....))))))...))))).((((((.......)))))))))))) -34.90\n",
      "((((((.((.(((...((((((....))))))...))))).((((((.(....))))))))))))) -34.90\n",
      "((((((.((.(((...((((((....))))))...))))).(((((((....).)))))))))))) -33.90\n",
      "((((((.(((.((...((((((....))))))..)))))..((((((.......)))))))))))) -33.90\n",
      "((((((.(((.((...((((((....))))))..)))))..((((((.(....))))))))))))) -33.90\n"
     ]
    }
   ],
   "source": [
    "print seq.predict_ss(method='RNAsubopt')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 53,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "((((((.((.(((...((((((....))))))...))))).((((((.......))))))))))))\n"
     ]
    }
   ],
   "source": [
    "print seq.predict_ss(method='ipknot')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 54,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "((((((.((.(((...((((((....))))))...))))).((((((.......)))))))))))) (g=1,th=0.5,e=-27.53)\n"
     ]
    }
   ],
   "source": [
    "print seq.predict_ss(method='centroid_fold')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 55,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "((((((....(((...((((((....))))))...)))...((((((.......))))))))))))\n",
      "\n"
     ]
    }
   ],
   "source": [
    "print seq.predict_ss(method='contextfold')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 48,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "GCAGGGCAAGGCCCAGUCCCGUGCAAGCCGGGACCGCCCCGCAAGGGGCGCGGCGCUCAUUCCUGC\n",
      "# cmscan :: search sequence(s) against a CM database\n",
      "# INFERNAL 1.1.2 (July 2016)\n",
      "# Copyright (C) 2016 Howard Hughes Medical Institute.\n",
      "# Freely distributed under a BSD open source license.\n",
      "# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\n",
      "# query sequence file:                   /tmp/ss.fa\n",
      "# target CM database:                    Rfam.cm\n",
      "# sequence reporting threshold:          E-value <= 1\n",
      "# number of worker threads:              4\n",
      "# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\n",
      "\n",
      "Query:       test  [L=65]\n",
      "Hit scores:\n",
      " rank     E-value  score  bias  modelname  start    end   mdl trunc   gc  description\n",
      " ----   --------- ------ -----  --------- ------ ------   --- ----- ----  -----------\n",
      "\n",
      "   [No hits detected that satisfy reporting thresholds]\n",
      "\n",
      "\n",
      "Hit alignments:\n",
      "\n",
      "   [No hits detected that satisfy reporting thresholds]\n",
      "\n",
      "\n",
      "Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)\n",
      "--------------------------------------------------------------------------------------\n",
      "Query sequence(s):                                               1  (130 residues searched)\n",
      "Target model(s):                                               347  (40911 consensus positions)\n",
      "Windows   passing  local HMM SSV           filter:               5  (0.007205); expected (0.02)\n",
      "Windows   passing  local HMM MSV      bias filter:               3  (0.004323); expected (0.02)\n",
      "Windows   passing  local HMM Viterbi       filter:               0  (0); expected (0.001)\n",
      "Windows   passing  local HMM Forward       filter:               0  (0); expected (1e-05)\n",
      "Total HMM hits reported:                                         0  (0)\n",
      "\n",
      "Internal CM pipeline statistics summary:\n",
      "----------------------------------------\n",
      "Query sequence(s):                                               1  (130 residues searched)\n",
      "Query sequences re-searched for truncated hits:                  1  (378.5 residues re-searched, avg per model)\n",
      "Target model(s):                                              2126  (267652 consensus positions)\n",
      "Windows   passing  local HMM SSV           filter:            1136  (0.06392); expected (0.35)\n",
      "Windows   passing  local HMM Viterbi       filter:                  (off)\n",
      "Windows   passing  local HMM Viterbi  bias filter:                  (off)\n",
      "Windows   passing  local HMM Forward       filter:             570  (0.0328); expected (0.02)\n",
      "Windows   passing  local HMM Forward  bias filter:             451  (0.02601); expected (0.02)\n",
      "Windows   passing glocal HMM Forward       filter:             138  (0.008112); expected (0.02)\n",
      "Windows   passing glocal HMM Forward  bias filter:             122  (0.00715); expected (0.02)\n",
      "Envelopes passing glocal HMM envelope defn filter:             118  (0.006324); expected (0.02)\n",
      "Envelopes passing  local CM  CYK           filter:              17  (0.0006004); expected (0.0001)\n",
      "Total CM hits reported:                                          0  (0); includes 0 truncated hit(s)\n",
      "\n",
      "Total CM and HMM hits reported:                                  0\n",
      "\n",
      "# CPU time: 4.46u 0.47s 00:00:04.93 Elapsed: 00:00:02.36\n",
      "//\n",
      "[ok]\n",
      "\n"
     ]
    }
   ],
   "source": [
    "import rna_pdb_tools.RfamSearch as rf\n",
    "#reload(rf)\n",
    "\n",
    "#seq = Seq.Seq(\"GGGUCAGGCCGGCGAAAGUCGCCACAGUUUGGGGAAAGCUGUGCAGCCUGUAACCCCCCCACGAAAGUGGG\")\n",
    "rs = rf.RfamSearch()\n",
    "print rs.cmscan(seq)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# PDB Blast search"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "<HTML>\n",
      "<TITLE>BLAST Search Results</TITLE>\n",
      "<BODY BGCOLOR=\"#FFFFFF\" LINK=\"#0000FF\" VLINK=\"#660099\" ALINK=\"#660099\">\n",
      "<PRE>\n",
      "<b>BLASTN 2.2.18 [Mar-02-2008]</b>\n",
      "\n",
      "\n",
      "<b><a href=\"http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids\n",
      "=9254694&dopt=Citation\">Reference</a>:</b>\n",
      "Altschul, Stephen F., Thomas L. Madden, Alejandro A. Sch&auml;ffer, \n",
      "Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), \n",
      "\"Gapped BLAST and PSI-BLAST: a new generation of protein database search\n",
      "programs\",  Nucleic Acids Res. 25:3389-3402.\n",
      "\n",
      "<b>Query=</b> UNKNOWN_SEQUENCE\n",
      "         (65 letters)\n",
      "\n",
      "<b>Database:</b> pdb_nucleotide \n",
      "           15,787 sequences; 2,694,141 total letters\n",
      "\n",
      "Searching..................................................done\n",
      "\n",
      "<PRE>\n",
      "\n",
      "\n",
      "                                                                 Score    E\n",
      "Sequences producing significant alignments:                      (bits) Value\n",
      "\n",
      "5J8B:1:A|pdbid|entity|chain(s)|sequence                               <a href = #15237> 24</a>   6.2  \n",
      "5J4D:2:B,GB|pdbid|entity|chain(s)|sequence                            <a href = #15214> 24</a>   6.2  \n",
      "5J4C:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #15209> 24</a>   6.2  \n",
      "5J4B:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #15203> 24</a>   6.2  \n",
      "5J3C:1:RA,YA|pdbid|entity|chain(s)|sequence                           <a href = #15194> 24</a>   6.2  \n",
      "5J30:1:RA,YA|pdbid|entity|chain(s)|sequence                           <a href = #15188> 24</a>   6.2  \n",
      "5IMR:23:D|pdbid|entity|chain(s)|sequence                              <a href = #15032> 24</a>   6.2  \n",
      "5IMQ:7:D|pdbid|entity|chain(s)|sequence                               <a href = #15027> 24</a>   6.2  \n",
      "5IBB:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14998> 24</a>   6.2  \n",
      "5IB8:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14990> 24</a>   6.2  \n",
      "5IB7:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14982> 24</a>   6.2  \n",
      "5HD1:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14918> 24</a>   6.2  \n",
      "5HCR:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14913> 24</a>   6.2  \n",
      "5HCQ:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14908> 24</a>   6.2  \n",
      "5HCP:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14903> 24</a>   6.2  \n",
      "5HAU:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14893> 24</a>   6.2  \n",
      "5FDV:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14725> 24</a>   6.2  \n",
      "5FDU:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14722> 24</a>   6.2  \n",
      "5F8K:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14694> 24</a>   6.2  \n",
      "5EL7:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14626> 24</a>   6.2  \n",
      "5EL6:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14618> 24</a>   6.2  \n",
      "5EL5:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14611> 24</a>   6.2  \n",
      "5EL4:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14602> 24</a>   6.2  \n",
      "5E81:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14551> 24</a>   6.2  \n",
      "5E7K:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #14544> 24</a>   6.2  \n",
      "5DOY:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14459> 24</a>   6.2  \n",
      "5DOX:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #14453> 24</a>   6.2  \n",
      "5DFE:4:RA,YA|pdbid|entity|chain(s)|sequence                           <a href = #14394> 24</a>   6.2  \n",
      "5D8B:51:VC,ZC|pdbid|entity|chain(s)|sequence                          <a href = #14324> 24</a>   6.2  \n",
      "5CZP:1:RA,YA|pdbid|entity|chain(s)|sequence                           <a href = #14282> 24</a>   6.2  \n",
      "5AA0:1:AA|pdbid|entity|chain(s)|sequence                              <a href = #13948> 24</a>   6.2  \n",
      "5A9Z:1:AA|pdbid|entity|chain(s)|sequence                              <a href = #13943> 24</a>   6.2  \n",
      "4ZSN:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #13896> 24</a>   6.2  \n",
      "4ZER:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #13867> 24</a>   6.2  \n",
      "4Z8C:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #13854> 24</a>   6.2  \n",
      "4Z3S:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #13796> 24</a>   6.2  \n",
      "4YZV:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #13770> 24</a>   6.2  \n",
      "4YPB:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #13742> 24</a>   6.2  \n",
      "4Y4P:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #13629> 24</a>   6.2  \n",
      "4Y4O:1:1A,2A|pdbid|entity|chain(s)|sequence                           <a href = #13623> 24</a>   6.2  \n",
      "4XEJ:51:A23S,B23S|pdbid|entity|chain(s)|sequence                      <a href = #13532> 24</a>   6.2  \n",
      "4WZO:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13449> 24</a>   6.2  \n",
      "4WZD:24:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13435> 24</a>   6.2  \n",
      "4WU1:24:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13411> 24</a>   6.2  \n",
      "4WT1:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13382> 24</a>   6.2  \n",
      "4WSM:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13375> 24</a>   6.2  \n",
      "4WSD:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13368> 24</a>   6.2  \n",
      "4WRO:5:14,1H|pdbid|entity|chain(s)|sequence                           <a href = #13352> 24</a>   6.2  \n",
      "4WRA:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13346> 24</a>   6.2  \n",
      "4WR6:25:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13338> 24</a>   6.2  \n",
      "4WQY:1:AA,CA|pdbid|entity|chain(s)|sequence                           <a href = #13327> 24</a>   6.2  \n",
      "4WQU:1:AA,CA|pdbid|entity|chain(s)|sequence                           <a href = #13322> 24</a>   6.2  \n",
      "4WQR:26:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13315> 24</a>   6.2  \n",
      "4WQF:1:AA,CA|pdbid|entity|chain(s)|sequence                           <a href = #13307> 24</a>   6.2  \n",
      "4WQ1:25:14,1H|pdbid|entity|chain(s)|sequence                          <a href = #13303> 24</a>   6.2  \n",
      "4WPO:1:AA,CA|pdbid|entity|chain(s)|sequence                           <a href = #13295> 24</a>   6.2  \n",
      "4W4G:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #13225> 24</a>   6.2  \n",
      "4W2I:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13220> 24</a>   6.2  \n",
      "4W2H:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13214> 24</a>   6.2  \n",
      "4W2G:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13208> 24</a>   6.2  \n",
      "4W2F:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13202> 24</a>   6.2  \n",
      "4W2E:1:A|pdbid|entity|chain(s)|sequence                               <a href = #13194> 24</a>   6.2  \n",
      "4W29:59:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13187> 24</a>   6.2  \n",
      "4V9S:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13184> 24</a>   6.2  \n",
      "4V9R:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13179> 24</a>   6.2  \n",
      "4V9Q:1:AA,CA|pdbid|entity|chain(s)|sequence                           <a href = #13173> 24</a>   6.2  \n",
      "4V9N:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13163> 24</a>   6.2  \n",
      "4V9M:58:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13156> 24</a>   6.2  \n",
      "4V9L:59:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13151> 24</a>   6.2  \n",
      "4V9K:59:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13146> 24</a>   6.2  \n",
      "4V9J:60:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13140> 24</a>   6.2  \n",
      "4V9I:26:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13138> 24</a>   6.2  \n",
      "4V9H:25:BA|pdbid|entity|chain(s)|sequence                             <a href = #13130> 24</a>   6.2  \n",
      "4V9B:24:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13108> 24</a>   6.2  \n",
      "4V9A:24:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13103> 24</a>   6.2  \n",
      "4V97:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13100> 24</a>   6.2  \n",
      "4V95:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13094> 24</a>   6.2  \n",
      "4V90:35:BA|pdbid|entity|chain(s)|sequence                             <a href = #13084> 24</a>   6.2  \n",
      "4V8X:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13067> 24</a>   6.2  \n",
      "4V8U:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13060> 24</a>   6.2  \n",
      "4V8Q:11:AA|pdbid|entity|chain(s)|sequence                             <a href = #13047> 24</a>   6.2  \n",
      "4V8O:35:BA|pdbid|entity|chain(s)|sequence                             <a href = #13039> 24</a>   6.2  \n",
      "4V8N:35:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13034> 24</a>   6.2  \n",
      "4V8J:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13018> 24</a>   6.2  \n",
      "4V8I:23:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13012> 24</a>   6.2  \n",
      "4V8H:23:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13009> 24</a>   6.2  \n",
      "4V8G:23:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #13006> 24</a>   6.2  \n",
      "4V8F:1:AA,DA|pdbid|entity|chain(s)|sequence                           <a href = #13002> 24</a>   6.2  \n",
      "4V8E:1:AA,CA|pdbid|entity|chain(s)|sequence                           <a href = #12996> 24</a>   6.2  \n",
      "4V8D:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12991> 24</a>   6.2  \n",
      "4V8C:1:AA,BA|pdbid|entity|chain(s)|sequence                           <a href = #12984> 24</a>   6.2  \n",
      "4V8B:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12979> 24</a>   6.2  \n",
      "4V8A:1:AA,BA|pdbid|entity|chain(s)|sequence                           <a href = #12972> 24</a>   6.2  \n",
      "4V87:1:AA,DA|pdbid|entity|chain(s)|sequence                           <a href = #12960> 24</a>   6.2  \n",
      "4V84:23:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12950> 24</a>   6.2  \n",
      "4V83:23:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12946> 24</a>   6.2  \n",
      "4V7P:25:BA,CA|pdbid|entity|chain(s)|sequence                          <a href = #12908> 24</a>   6.2  \n",
      "4V7M:27:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12902> 24</a>   6.2  \n",
      "4V7L:27:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12894> 24</a>   6.2  \n",
      "4V7K:57:AA,BA|pdbid|entity|chain(s)|sequence                          <a href = #12884> 24</a>   6.2  \n",
      "4V7J:57:AA,BA|pdbid|entity|chain(s)|sequence                          <a href = #12878> 24</a>   6.2  \n",
      "4V6G:24:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12680> 24</a>   6.2  \n",
      "4V6F:1:AA|pdbid|entity|chain(s)|sequence                              <a href = #12677> 24</a>   6.2  \n",
      "4V6F:55:DA|pdbid|entity|chain(s)|sequence                             <a href = #12673> 24</a>   6.2  \n",
      "4V6A:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12652> 24</a>   6.2  \n",
      "4V67:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12632> 24</a>   6.2  \n",
      "4V63:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12614> 24</a>   6.2  \n",
      "4V5S:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12402> 24</a>   6.2  \n",
      "4V5R:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12396> 24</a>   6.2  \n",
      "4V5Q:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12390> 24</a>   6.2  \n",
      "4V5P:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12384> 24</a>   6.2  \n",
      "4V5N:35:BA|pdbid|entity|chain(s)|sequence                             <a href = #12377> 24</a>   6.2  \n",
      "4V5M:35:BA|pdbid|entity|chain(s)|sequence                             <a href = #12372> 24</a>   6.2  \n",
      "4V5L:36:BA|pdbid|entity|chain(s)|sequence                             <a href = #12367> 24</a>   6.2  \n",
      "4V5K:35:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12361> 24</a>   6.2  \n",
      "4V5J:35:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12355> 24</a>   6.2  \n",
      "4V5G:36:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12345> 24</a>   6.2  \n",
      "4V5F:35:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12339> 24</a>   6.2  \n",
      "4V5E:35:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #12334> 24</a>   6.2  \n",
      "4V4Z:25:BA|pdbid|entity|chain(s)|sequence                             <a href = #12278> 24</a>   6.2  \n",
      "4V4Y:24:BA|pdbid|entity|chain(s)|sequence                             <a href = #12269> 24</a>   6.2  \n",
      "4V4X:24:BA|pdbid|entity|chain(s)|sequence                             <a href = #12264> 24</a>   6.2  \n",
      "4V4T:26:BA|pdbid|entity|chain(s)|sequence                             <a href = #12255> 24</a>   6.2  \n",
      "4V4S:27:BA|pdbid|entity|chain(s)|sequence                             <a href = #12249> 24</a>   6.2  \n",
      "4V4R:27:BA|pdbid|entity|chain(s)|sequence                             <a href = #12243> 24</a>   6.2  \n",
      "4V4P:2:AA|pdbid|entity|chain(s)|sequence                              <a href = #12231> 24</a>   6.2  \n",
      "4V4J:1:w|pdbid|entity|chain(s)|sequence                               <a href = #12220> 24</a>   6.2  \n",
      "4V4I:1:w|pdbid|entity|chain(s)|sequence                               <a href = #12214> 24</a>   6.2  \n",
      "4V42:25:BA|pdbid|entity|chain(s)|sequence                             <a href = #12184> 24</a>   6.2  \n",
      "4TUE:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11881> 24</a>   6.2  \n",
      "4TUD:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11874> 24</a>   6.2  \n",
      "4TUC:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11867> 24</a>   6.2  \n",
      "4TUB:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11860> 24</a>   6.2  \n",
      "4TUA:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11853> 24</a>   6.2  \n",
      "4P70:22:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11364> 24</a>   6.2  \n",
      "4P6F:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #11357> 24</a>   6.2  \n",
      "4LT8:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10916> 24</a>   6.2  \n",
      "4LSK:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10907> 24</a>   6.2  \n",
      "4LNT:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10893> 24</a>   6.2  \n",
      "4LFZ:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10873> 24</a>   6.2  \n",
      "4LEL:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10855> 24</a>   6.2  \n",
      "4L71:22:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10834> 24</a>   6.2  \n",
      "4L47:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #10822> 24</a>   6.2  \n",
      "1VY7:26:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #3079> 24</a>   6.2  \n",
      "1VY6:25:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #3072> 24</a>   6.2  \n",
      "1VY5:26:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #3066> 24</a>   6.2  \n",
      "1VY4:26:BA,DA|pdbid|entity|chain(s)|sequence                          <a href = #3059> 24</a>   6.2  \n",
      "1VVJ:25:RA,YA|pdbid|entity|chain(s)|sequence                          <a href = #3052> 24</a>   6.2  \n",
      "1ML5:4:a|pdbid|entity|chain(s)|sequence                               <a href = #1790> 24</a>   6.2  \n",
      "</PRE>\n",
      "<PRE>\n",
      "><a name = 15237></a>5J8B:1:A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15214></a>5J4D:2:B,GB|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2880\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 561 gccccgcaaggg 572\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15209></a>5J4C:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15203></a>5J4B:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15194></a>5J3C:1:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15188></a>5J30:1:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15032></a>5IMR:23:D|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2893\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 15027></a>5IMQ:7:D|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2893\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14998></a>5IBB:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14990></a>5IB8:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14982></a>5IB7:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14918></a>5HD1:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14913></a>5HCR:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14908></a>5HCQ:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14903></a>5HCP:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14893></a>5HAU:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14725></a>5FDV:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14722></a>5FDU:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14694></a>5F8K:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14626></a>5EL7:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14618></a>5EL6:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14611></a>5EL5:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14602></a>5EL4:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14551></a>5E81:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14544></a>5E7K:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14459></a>5DOY:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14453></a>5DOX:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14394></a>5DFE:4:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14324></a>5D8B:51:VC,ZC|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2893\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 14282></a>5CZP:1:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13948></a>5AA0:1:AA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2889\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13943></a>5A9Z:1:AA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2889\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13896></a>4ZSN:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13867></a>4ZER:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13854></a>4Z8C:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13796></a>4Z3S:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13770></a>4YZV:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13742></a>4YPB:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13629></a>4Y4P:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13623></a>4Y4O:1:1A,2A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13532></a>4XEJ:51:A23S,B23S|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13449></a>4WZO:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13435></a>4WZD:24:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13411></a>4WU1:24:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13382></a>4WT1:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13375></a>4WSM:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13368></a>4WSD:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13352></a>4WRO:5:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13346></a>4WRA:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2918\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 566 gccccgcaaggg 577\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13338></a>4WR6:25:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13327></a>4WQY:1:AA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13322></a>4WQU:1:AA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13315></a>4WQR:26:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2917\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13307></a>4WQF:1:AA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13303></a>4WQ1:25:14,1H|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13295></a>4WPO:1:AA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13225></a>4W4G:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13220></a>4W2I:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13214></a>4W2H:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13208></a>4W2G:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13202></a>4W2F:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13194></a>4W2E:1:A|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13187></a>4W29:59:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13184></a>4V9S:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13179></a>4V9R:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13173></a>4V9Q:1:AA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13163></a>4V9N:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13156></a>4V9M:58:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13151></a>4V9L:59:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13146></a>4V9K:59:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13140></a>4V9J:60:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13138></a>4V9I:26:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13130></a>4V9H:25:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13108></a>4V9B:24:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13103></a>4V9A:24:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13100></a>4V97:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13094></a>4V95:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13084></a>4V90:35:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13067></a>4V8X:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2848\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 558 gccccgcaaggg 569\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13060></a>4V8U:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13047></a>4V8Q:11:AA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13039></a>4V8O:35:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13034></a>4V8N:35:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13018></a>4V8J:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13012></a>4V8I:23:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13009></a>4V8H:23:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2913\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 561 gccccgcaaggg 572\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13006></a>4V8G:23:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 13002></a>4V8F:1:AA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12996></a>4V8E:1:AA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12991></a>4V8D:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12984></a>4V8C:1:AA,BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12979></a>4V8B:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12972></a>4V8A:1:AA,BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12960></a>4V87:1:AA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12950></a>4V84:23:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12946></a>4V83:23:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12908></a>4V7P:25:BA,CA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2879\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12902></a>4V7M:27:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12894></a>4V7L:27:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12884></a>4V7K:57:AA,BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2848\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 558 gccccgcaaggg 569\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12878></a>4V7J:57:AA,BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2848\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 558 gccccgcaaggg 569\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12680></a>4V6G:24:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2898\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 560 gccccgcaaggg 571\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12677></a>4V6F:1:AA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2909\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 562 gccccgcaaggg 573\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12673></a>4V6F:55:DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2912\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12652></a>4V6A:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12632></a>4V67:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2894\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12614></a>4V63:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2894\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12402></a>4V5S:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12396></a>4V5R:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12390></a>4V5Q:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12384></a>4V5P:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12377></a>4V5N:35:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12372></a>4V5M:35:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12367></a>4V5L:36:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12361></a>4V5K:35:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2848\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 558 gccccgcaaggg 569\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12355></a>4V5J:35:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12345></a>4V5G:36:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12339></a>4V5F:35:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12334></a>4V5E:35:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2901\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 558 gccccgcaaggg 569\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12278></a>4V4Z:25:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12269></a>4V4Y:24:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12264></a>4V4X:24:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12255></a>4V4T:26:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12249></a>4V4S:27:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12243></a>4V4R:27:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12231></a>4V4P:2:AA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12220></a>4V4J:1:w|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2889\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12214></a>4V4I:1:w|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2889\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 12184></a>4V42:25:BA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11881></a>4TUE:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11874></a>4TUD:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11867></a>4TUC:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11860></a>4TUB:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11853></a>4TUA:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11364></a>4P70:22:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 11357></a>4P6F:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10916></a>4LT8:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10907></a>4LSK:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10893></a>4LNT:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10873></a>4LFZ:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10855></a>4LEL:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10834></a>4L71:22:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 10822></a>4L47:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 3079></a>1VY7:26:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 3072></a>1VY6:25:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 3066></a>1VY5:26:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 3059></a>1VY4:26:BA,DA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2915\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 563 gccccgcaaggg 574\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 3052></a>1VVJ:25:RA,YA|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 564 gccccgcaaggg 575\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "><a name = 1790></a>1ML5:4:a|pdbid|entity|chain(s)|sequence\n",
      "          Length = 2916\n",
      "\n",
      " Score = 24.3 bits (12), Expect = 6.2\n",
      " Identities = 12/12 (100%)\n",
      " Strand = Plus / Plus\n",
      "\n",
      "                       \n",
      "Query: 36  gccccgcaaggg 47\n",
      "           ||||||||||||\n",
      "Sbjct: 565 gccccgcaaggg 576\n",
      "</PRE>\n",
      "\n",
      "\n",
      "<PRE>\n",
      "  Database: pdb_nucleotide\n",
      "    Posted date:  Oct 30, 2016  3:26 AM\n",
      "  Number of letters in database: 2,694,141\n",
      "  Number of sequences in database:  15,787\n",
      "  \n",
      "Lambda     K      H\n",
      "    1.37    0.711     1.31 \n",
      "\n",
      "Gapped\n",
      "Lambda     K      H\n",
      "    1.37    0.711     1.31 \n",
      "\n",
      "\n",
      "Matrix: blastn matrix:1 -3\n",
      "Gap Penalties: Existence: 5, Extension: 2\n",
      "Number of Sequences: 15787\n",
      "Number of Hits to DB: 2101\n",
      "Number of extensions: 158\n",
      "Number of successful extensions: 158\n",
      "Number of sequences better than 10.0: 149\n",
      "Number of HSP's gapped: 158\n",
      "Number of HSP's successfully gapped: 149\n",
      "Length of query: 65\n",
      "Length of database: 2,694,141\n",
      "Length adjustment: 14\n",
      "Effective length of query: 51\n",
      "Effective length of database: 2,473,123\n",
      "Effective search space: 126129273\n",
      "Effective search space used: 126129273\n",
      "X1: 10 (19.8 bits)\n",
      "X2: 15 (29.7 bits)\n",
      "X3: 50 (99.1 bits)\n",
      "S1: 10 (20.3 bits)\n",
      "S2: 12 (24.3 bits)\n",
      "</PRE>\n",
      "</BODY>\n",
      "</HTML>\n"
     ]
    }
   ],
   "source": [
    "p = BlastPDB(seq.seq)\n",
    "p.search()\n",
    "print p.result"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# 3D structure analysis"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from rna_pdb_tools.pdb_parser_lib import RNAStructure\n",
    "\n",
    "fn = \"rna_pdb_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb\"\n",
    "\n",
    "s = RNAStructure(fn)\n",
    "print s.get_report()\n",
    "print s.get_info_chains()\n",
    "print s.get_head()\n",
    "#print s.view() # image paste here :-)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "%%bash\n",
    "cd rna_pdb_tools\n",
    "./rna-pdb-tools.py --no_hr --get_seq data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# RNA 3D structure prediction"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "# model using SimRNA\n",
    "#res = SimRNA(ss,seq.get_ss())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "# fake import, should be \n",
    "res = \"rna_pdb_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb\"\n",
    "# view\n",
    "view = nglview.show_structure_file(res)\n",
    "view.add_representation(repr_type='cartoon')\n",
    "view"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# rna_pdb_tools --get_seq"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "%%bash\n",
    "cd rna_pdb_tools\n",
    "./rna-pdb-tools.py --no_hr --get_seq input/5k7c.pdb"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "%%bash\n",
    "cd rna_pdb_tools\n",
    "./rna-pdb-tools.py --no_hr --get_seq input/5k7c.pdb\n",
    "./rna-pdb-tools.py --no_hr --get_seq input/tetraloop.pdb\n",
    "./rna-pdb-tools.py --get_seq input/1xjr.pdb"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 2",
   "language": "python",
   "name": "python2"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 2
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython2",
   "version": "2.7.12"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 0
}