diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 095a7ad..eca5ac0 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -39,21 +39,21 @@ jobs: - run: docker compose build base --build-arg mne_v="$MNE_VERSION" - run: docker tag mnetools/mne-python ghcr.io/mne-tools/mne-python:${DOCKER_TAG} - name: System info - base image - run: docker run mnetools/mne-python:${DOCKER_TAG} python -c "import mne; mne.sys_info()" + run: docker run mnetools/mne-python python -c "import mne; mne.sys_info()" - name: Run base test - run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python:${DOCKER_TAG} python /opt/app/examples/tests/base.py + run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python python /opt/app/examples/tests/base.py - run: docker compose build jupyter - run: docker tag mnetools/mne-python-jupyter ghcr.io/mne-tools/mne-python-jupyter:${DOCKER_TAG} - name: System info - jupyter image - run: docker run mnetools/mne-python-jupyter:${DOCKER_TAG} ipython -c "import mne; mne.sys_info()" + run: docker run mnetools/mne-python-jupyter ipython -c "import mne; mne.sys_info()" - name: Run jupyter test - run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-jupyter:${DOCKER_TAG} ipython /opt/app/examples/tests/base.py + run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-jupyter ipython /opt/app/examples/tests/base.py - run: docker compose build plot - run: docker tag mnetools/mne-python-plot ghcr.io/mne-tools/mne-python-plot:${DOCKER_TAG} - name: System info - plot image - run: docker run mnetools/mne-python-plot:${DOCKER_TAG} python -c "import mne; mne.sys_info()" + run: docker run mnetools/mne-python-plot python -c "import mne; mne.sys_info()" - name: Run plotting test - run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-plot:${DOCKER_TAG} python /opt/app/examples/tests/plot.py + run: docker run -v `pwd`:/opt/app/examples mnetools/mne-python-plot python /opt/app/examples/tests/plot.py - name: Push images to github run: | set -exo pipefail diff --git a/base/Dockerfile b/base/Dockerfile index 4daec3c..a123e22 100644 --- a/base/Dockerfile +++ b/base/Dockerfile @@ -65,6 +65,7 @@ RUN conda install --yes \ h5io \ mamba \ conda-libmamba-solver \ + mne-bids-pipeline \ && conda clean -tipy \ && find /opt/conda/ -type f,l -name '*.a' -delete \ && find /opt/conda/ -type f,l -name '*.pyc' -delete \