diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index d4a676f..6ebb8fe 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -1,11 +1,24 @@ name: tests -on: [push] +on: + push: + branches: + - main + tags: ['*'] + pull_request: + +concurrency: + group: test-${{ github.head_ref }} + cancel-in-progress: true + +env: + PYTHONUNBUFFERED: "1" + FORCE_COLOR: "1" jobs: build: - name: ${{ matrix.os }} python ${{ matrix.python-version }} + name: Python ${{ matrix.python-version }} on ${{ startsWith(matrix.os, 'macos-') && 'macOS' || startsWith(matrix.os, 'windows-') && 'Windows' || 'Linux' }} runs-on: ${{ matrix.os }} @@ -21,38 +34,22 @@ jobs: steps: - name: Check out code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - - name: Set up python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} - - name: Install poetry - shell: bash - run: | - curl -sSL https://install.python-poetry.org | POETRY_HOME="$HOME/.poetry" python - - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - - - name: Build and install with poetry - shell: bash - run: | - poetry run python -m pip install --upgrade pip - poetry env info - rm poetry.lock - poetry update - poetry build - poetry install --no-interaction + - name: Install Hatch + run: pip install --upgrade hatch - name: Run tests - shell: bash - run: | - poetry run pytest -s --cov=quaternionic --cov-branch --cov-report=xml --durations=0 - + run: hatch run test - name: Upload coverage if: "matrix.python-version == '3.11' && matrix.os == 'ubuntu-latest'" - uses: codecov/codecov-action@v2 + uses: codecov/codecov-action@v3 release: @@ -66,35 +63,15 @@ jobs: steps: - name: Check out code - uses: actions/checkout@v2 + uses: actions/checkout@v3 - - name: Set up python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + - name: Set up python + uses: actions/setup-python@v4 with: python-version: '3.11' - - name: Install toml - if: ${{ env.skipping_build_and_test_replicate != 'true' }} - shell: bash - run: | - python -m pip install --upgrade pip toml - - - name: Install poetry - shell: bash - run: | - curl -sSL https://install.python-poetry.org | POETRY_HOME="$HOME/.poetry" python - - echo "$HOME/.poetry/bin" >> $GITHUB_PATH - - - name: Build and install with poetry - if: ${{ env.skipping_build_and_test_replicate != 'true' }} - shell: bash - run: | - $HOME/.poetry/bin/poetry run python -m pip install --upgrade pip - $HOME/.poetry/bin/poetry env info - rm poetry.lock - $HOME/.poetry/bin/poetry update - $HOME/.poetry/bin/poetry build - $HOME/.poetry/bin/poetry install --no-interaction --no-dev + - name: Install Hatch + run: pip install --upgrade hatch - name: Bump version shell: bash @@ -103,10 +80,10 @@ jobs: run: | export version_bump_rule=$(python .github/scripts/parse_bump_rule.py) echo "version_bump_rule: '${version_bump_rule}'" - $HOME/.poetry/bin/poetry version "${version_bump_rule}" - export new_version=$(python .github/scripts/parse_version.py pyproject.toml) + hatch version "${version_bump_rule}" + export new_version=$(hatch version) echo "new_version: '${new_version}'" - echo "new_version=${new_version}" >> $GITHUB_ENV + echo "new_version=${new_version}" >> $GITHUB_ENV # Save env variable for later steps - name: Tag and push new version shell: bash @@ -136,10 +113,8 @@ jobs: env: # 1) Get key from https://pypi.org/manage/account/token/ # 2) Copy it to Github > repo > Settings > Secrets - POETRY_PYPI_TOKEN_PYPI: ${{ secrets.PYPI_TOKEN }} + HATCH_INDEX_USER: __token__ + HATCH_INDEX_AUTH: ${{ secrets.PYPI_TOKEN }} shell: bash run: | - # Do these first two steps again to ensure the version is right - $HOME/.poetry/bin/poetry build - $HOME/.poetry/bin/poetry install --no-interaction --no-dev - $HOME/.poetry/bin/poetry publish + hatch publish diff --git a/LICENSE b/LICENSE index 0f742fe..2da9302 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ The MIT License (MIT) -Copyright (c) 2020 Michael Boyle +Copyright (c) 2023 Michael Boyle Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 77dd746..0000000 --- a/poetry.lock +++ /dev/null @@ -1,1245 +0,0 @@ -[[package]] -name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" -category = "main" -optional = true -python-versions = ">=3.6" - 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-[tool.poetry.dev-dependencies] -pytest = "^7.0" -pytest-cov = ">=2.10.1" -black = {version = ">=22.1", optional = true, markers = "implementation_name == 'cpython'"} - -[tool.poetry.extras] -mkdocs = ["mkdocs"] -mktheapidocs = ["mktheapidocs"] -pymdown-extensions = ["pymdown-extensions"] +requires-python = ">=3.8" +license = {file = "LICENSE"} +authors = [ + { name = "Michael Boyle", email = "michael.oliver.boyle@gmail.com" } +] +classifiers = [ + "License :: OSI Approved :: MIT License", + "Development Status :: 5 - Production/Stable", + "Programming Language :: Python :: 3", + "Operating System :: OS Independent", + "Intended Audience :: Science/Research", + "Topic :: Scientific/Engineering :: Physics", + "Topic :: Scientific/Engineering :: Astronomy" +] + +dependencies = [ + "numpy >=1.20", + "scipy >=1.5", + "numba >=0.55; implementation_name == 'cpython'" +] + +[project.urls] +Homepage = "https://github.com/moble/quaternionic" +Documentation = "https://sxs.readthedocs.io/" + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + + +[tool.hatch.envs.default] +dependencies = [ + "pytest", + "pytest-cov", + "black" +] +[tool.hatch.envs.default.scripts] +# Run these as `hatch run test` +test = "pytest {args:tests}" + +[tool.hatch.envs.docs] +dependencies = [ + "mkdocs", + "mktheapidocs", + "pymdown-extensions" +] +[tool.hatch.envs.docs.scripts] +# Run these as `hatch run docs:build` or `hatch run docs:serve` +build = "mkdocs build --clean" +serve = "mkdocs serve --dev-addr localhost:8000" + +# This is just a workaround; see https://github.com/danielfrg/mkdocs-jupyter/issues/154 +[tool.hatch.envs.docs.env-vars] +JUPYTER_PLATFORM_DIRS = "1" + [tool.black] line-length = 120 -target-version = ['py38','py39','py310'] +target-version = ["py38"] + [tool.pytest.ini_options] minversion = "6.0" norecursedirs = ".* build dist *.egg-info install ENV" junit_family="xunit2" addopts = "-s -v --tb=short --doctest-glob='' --cov=quaternionic --cov-branch --cov-report xml" - -[build-system] -requires = ["poetry-core>=1.0.1"] -build-backend = "poetry.core.masonry.api" diff --git a/quaternionic/converters.py b/quaternionic/converters.py index c753fff..bd3b8ee 100644 --- a/quaternionic/converters.py +++ b/quaternionic/converters.py @@ -248,7 +248,7 @@ def from_rotation_matrix(cls, rot, nonorthogonal=True): if not shape: q = np.empty((4,), dtype=rot.dtype) - eigvals, eigvecs = linalg.eigh(K3.T, eigvals=(3, 3)) + eigvals, eigvecs = linalg.eigh(K3.T, subset_by_index=(3, 3)) q[0] = eigvecs[-1] q[1:] = -eigvecs[:-1].flatten() return cls(q) @@ -256,7 +256,7 @@ def from_rotation_matrix(cls, rot, nonorthogonal=True): q = np.empty(shape+(4,), dtype=rot.dtype) for flat_index in range(reduce(mul, shape)): multi_index = np.unravel_index(flat_index, shape) - eigvals, eigvecs = linalg.eigh(K3[multi_index], eigvals=(3, 3)) + eigvals, eigvecs = linalg.eigh(K3[multi_index], subset_by_index=(3, 3)) q[multi_index+(0,)] = eigvecs[-1] q[multi_index+(slice(1,None),)] = -eigvecs[:-1].flatten() return cls(q)