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commit.yml
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name: Commit continuous integration
on:
push:
pull_request:
branches:
- master
- develop
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
build:
name: Build
runs-on: ubuntu-latest
defaults:
run:
shell: bash
timeout-minutes: 10
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Python
uses: astral-sh/setup-uv@v5
with:
enable-cache: false
- name: Build package
run: uv build
- name: Check package
run: uvx twine check --strict dist/*
lint:
name: Lint
runs-on: ubuntu-latest
defaults:
run:
shell: bash
timeout-minutes: 10
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Python
uses: astral-sh/setup-uv@v5
with:
enable-cache: false
- name: Lint
run: uvx ruff check
- name: Check format
run: uvx ruff format --check
- name: Check spelling
run: uvx codespell
- name: Check CITATION.cff
run: |
uvx cffconvert --validate
uvx cffconvert -f apalike
uvx cffconvert -f bibtex
smoke:
name: Smoke test
runs-on: ubuntu-latest
defaults:
run:
shell: bash
timeout-minutes: 10
env:
PYTHON_VERSION: 3.9
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Python
uses: astral-sh/setup-uv@v5
with:
cache-dependency-glob: "**/pyproject.toml"
- name: Install Python dependencies
# temp. allow prereleases for vtk on aarch64
run: uv sync --all-extras --prerelease=allow
- name: Install Modflow executables
uses: modflowpy/install-modflow-action@v1
- name: Smoke test
working-directory: autotest
run: uv run pytest -v -n=auto --smoke --cov=flopy --cov-report=xml --durations=0 --keep-failed=.failed
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Upload failed test outputs
uses: actions/upload-artifact@v4
if: failure()
with:
name: failed-smoke-${{ runner.os }}-${{ env.PYTHON_VERSION }}
path: autotest/.failed/**
- name: Upload coverage
if: github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request')
uses: codecov/codecov-action@v5
with:
files: autotest/coverage.xml
test:
name: Test
needs: smoke
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, macos-latest, windows-latest ]
python-version: [ 3.9, "3.10", "3.11", "3.12" ]
defaults:
run:
shell: bash -l {0}
timeout-minutes: 60
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup Python ${{ matrix.python-version }}
uses: astral-sh/setup-uv@v5
with:
cache-dependency-glob: "**/pyproject.toml"
python-version: ${{ matrix.python-version }}
- name: Install FloPy
run: uv sync --all-extras
- name: Install Modflow-related executables
uses: modflowpy/install-modflow-action@v1
- name: Install Modflow dev build executables
uses: modflowpy/install-modflow-action@v1
with:
repo: modflow6-nightly-build
- name: Install triangle (macOS workaround)
if: runner.os == 'macOS'
uses: modflowpy/install-modflow-action@v1
with:
repo: executables
ostag: mac
subset: triangle
- name: Update package classes
run: uv run python -m flopy.mf6.utils.generate_classes --ref develop --no-backup
- name: Run tests
working-directory: autotest
run: |
uv run pytest -v -m="not example" -n=auto --cov=flopy --cov-append --cov-report=xml --durations=0 --keep-failed=.failed --dist loadfile
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Report coverage
working-directory: autotest
run: uv run coverage report
- name: Upload failed test outputs
uses: actions/upload-artifact@v4
if: failure()
with:
name: failed-${{ matrix.os }}-${{ matrix.python-version }}
path: autotest/.failed/**
- name: Upload coverage
if: github.repository_owner == 'modflowpy' && (github.event_name == 'push' || github.event_name == 'pull_request')
uses: codecov/codecov-action@v5
with:
files: autotest/coverage.xml