diff --git a/data/biobank-directory/demo/Collections.csv b/data/biobank-directory/demo/Collections.csv index 0957b3ffd4d..43a87ba031c 100644 --- a/data/biobank-directory/demo/Collections.csv +++ b/data/biobank-directory/demo/Collections.csv @@ -1,4 +1,4 @@ id,name,acronym,description,url,location,country,latitude,longitude,head,contact,national_node,withdrawn,parent_collection,biobank,biobank_label,network,combined_network,also_known,type,data_categories,order_of_magnitude,size,categories,timestamp,number_of_donors,order_of_magnitude_donors,sex,diagnosis_available,age_low,age_high,age_unit,materials,storage_temperatures,body_part_examined,imaging_modality,image_dataset_type,collaboration_commercial,collaboration_non_for_profit,data_use,commercial_use,access_fee,access_joint_project,access_description,access_uri,sop,combined_quality,study -bbmri-eric:ID:DE_biobank1:collection:coll1,Collection1 of biobank1,coll1,The first collection of biobank1,,Berlin,DE,,,bbmri-eric:contactID:DE_collection1,bbmri-eric:contactID:DE_collection1,DE,false,,bbmri-eric:ID:DE_biobank1,Biobank1,bbmri-eric:networkID:DE_nw_coll1,"bbmri-eric:networkID:DE_network1,bbmri-eric:networkID:DE_nw_coll1",bbmri-eric:akiID:DE_00001,"COHORT,RD","MEDICAL_RECORDS,BLOOD",3,1333,"rare_disease,cancer",,600,2,"MALE,NEUTERED_MALE","ORPHA:100001,ORPHA:101009",2,88,YEAR,"DNA,PERIPHERAL_BLOOD_CELLS",temperature2to10,T-04000,BDUS,1.2.840.10008.5.1.4.1.1.104.2,true,true,DUO_0000003,true,"samples,data,images","data,images",,,"sample_transport_sop,data_processing_sop",accredited,bbmri_eric:ID:DE:112233 +bbmri-eric:ID:DE_biobank1:collection:coll1,Collection1 of biobank1,coll1,The first collection of biobank1,,Berlin,DE,,,bbmri-eric:contactID:DE_collection1,bbmri-eric:contactID:DE_collection1,DE,false,,bbmri-eric:ID:DE_biobank1,Biobank1,bbmri-eric:networkID:DE_nw_coll1,"bbmri-eric:networkID:DE_network1,bbmri-eric:networkID:DE_nw_coll1",bbmri-eric:akiID:DE_00001,"COHORT,RD","MEDICAL_RECORDS,BLOOD",3,1333,"rare_disease,cancer",,600,2,"MALE,NEUTERED_MALE","ORPHA:100001,ORPHA:101009",2,88,YEAR,"DNA,PERIPHERAL_BLOOD_CELLS",temperature2to10,T-04000,BDUS,1.2.840.10008.5.1.4.1.1.104.2,true,true,DUO_0000003,true,"samples,data,images","data,images",,,"sample_transport_sop,data_processing_sop",accredited,bbmri-eric:studyID:DE_112233 bbmri-eric:ID:NL_biobank2:collection:coll2,The second collection of biobank2,coll2_bb2,This is the description of the second collection of biobank2,,Amsterdam,NL,,,bbmri-eric:contactID:head_coll2,bbmri-eric:contactID:NL_person1,NL,false,,bbmri-eric:ID:NL_biobank2,Biobank2,bbmri-eric:networkID:EU_network,bbmri-eric:networkID:EU_network,bbmri-eric:akiID:NL_00001,"CASE_CONTROL,QUALITY_CONTROL","BIOLOGICAL_SAMPLES,IMAGING_DATA,NATIONAL_REGISTRIES",4,11000,"covid19,paediatric_only",,9000,3,FEMALE,"urn:miriam:icd:W00,ORPHA:3000",0,90,YEAR,"FECES,PATHOGEN,URINE",temperatureLN,T-58200,CR,1.2.840.10008.5.1.4.1.1.130,true,true,DUO_0000042,false,"samples,data,images","samples,data,images",Access is possible need to pay a fee,,"sample_processing_sop,sample_transport_sop,data_transport_sop,data_storage_sop",accredited, bbmri-eric:ID:NL_biobank2:collection:coll2a,Subcollection1,sub_col1,The first sub collection of collection2,,Amsterdam,NL,,,bbmri-eric:contactID:head_coll2,bbmri-eric:contactID:NL_person1,NL,false,bbmri-eric:ID:NL_biobank2:collection:coll2,bbmri-eric:ID:NL_biobank2,Biobank2,bbmri-eric:networkID:EU_network,bbmri-eric:networkID:EU_network,bbmri-eric:akiID:NL_00002,"CROSS_SECTIONAL,POPULATION_BASED","ANTIBODIES,PHYSIOLOGICAL_BIOCHEMICAL_MEASUREMENTS",2,589,covid19,,133,2,MALE,"ORPHA:1388,ORPHA:139552,urn:miriam:icd:A00.9",5,67,YEAR,"NASAL_SWAB,PLASMA","temperature2to10,temperature-18to-35",T-15710,BMD,1.2.840.10008.5.1.4.1.1.11.1,true,true,DUO_0000024,true,data,data,,,"sample_storage_sop,data_processing_sop,data_transport_sop,data_storage_sop",accredited, \ No newline at end of file diff --git a/data/biobank-directory/demo/Studies.csv b/data/biobank-directory/demo/Studies.csv index 663578da4e7..15bbadc11ec 100644 --- a/data/biobank-directory/demo/Studies.csv +++ b/data/biobank-directory/demo/Studies.csv @@ -1,2 +1,2 @@ id,title,description,type,sex,age_high,age_low,age_unit,also_known -bbmri_eric:ID:DE:112233,Dummy study,This is just a fake study with demo data,Interventional,"FEMALE,MALE",10,50,YEAR,bbmri-eric:akiID:DE_00002 +bbmri-eric:studyID:DE_112233,Dummy study,This is just a fake study with demo data,Interventional,"FEMALE,MALE",10,50,YEAR,bbmri-eric:akiID:DE_00002 diff --git a/data/biobank-directory/molgenis.csv b/data/biobank-directory/molgenis.csv index bffefd6974f..2d16573f4f3 100644 --- a/data/biobank-directory/molgenis.csv +++ b/data/biobank-directory/molgenis.csv @@ -163,7 +163,7 @@ Persons,,biobanks,Biobanks,refback,,false,true,Biobanks the person is connected Persons,,collections,Collections,refback,,false,true,Collections the person is connected to.,,Collections,contact,,,,,, Persons,,networks,Networks,refback,,false,true,Networks the person is connected to.,,Networks,contact,,,,,, Persons,,national_node,National Node,ref,,true,,The person originates from this national node.,,NationalNodes,,${description},,,,, -Studies,,,,,,,,Table with information about studies imported from ECRIN MDR. A Study is intended as a clinical trial in which context the collection was generated,,,,,,,,, +Studies,,,,,,,,Table with information about the studies in which context the collection was generated,,,,,,,,, Studies,,id,ID,string,1,true,,"Unique ID of the study, prefixed with bbmri-eric:ID:",,,,,,,,, Studies,,title,Title,text,,true,,The title of the study,,,,,,,,, Studies,,description,Description,text,,false,,A text describing the study,,,,,,,,,