reinit_histdb.sh

#!/bin/bash
#This script runs all the commands to initialize hisoneDB from scratch.
echo "Reinitializing HistDB from scratch"

find static/browse/seeds -name "*.gff" | xargs rm
find static/browse/seeds -name "*.pdf" | xargs rm

python manage.py flush << EOF
yes
EOF

#python manage.py migrate
#python manage.py sqlclear browse | python manage.py dbshell
#python manage.py sqlclear djangophylocore | python manage.py dbshell
python manage.py migrate


python manage.py buildncbi
python manage.py loadtaxonomy
python manage.py buildtaxonomytoc
python manage.py buildvariants -f --db /web/public/data/projects/HistoneDB2.0/nr 
python manage.py buildtrees -f
python manage.py buildsunburst -f
python manage.py buildblastdb -f
python manage.py buildvariantinfo -f
python manage.py buildseedinfo -f