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when i run
In [4]: fp = 'data-raw/cellline2pubtatorcentral.gz' ...: fc = 'data-raw/cellosaurus.txt' ...: fh = 'data-raw/HIPPIE.mitab' In [5]: ppictx.process_raw_data(fh, fp, fc)
it raise Exception
~ [PID -> CLA] ~ [CLA -> CID] ~ [PPI -> PID -> CLA -> CID] --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) Cell In [5], line 1 ----> 1 ppictx.process_raw_data(fh, fp, fc) File ~/code/someProject/ppi-context/ppictx/routine.py:66, in process_raw_data(fh, fp, fc) 64 pid_cla = ppictx.process_pid_cla(fp) 65 cla_cid = ppictx.process_cla_cid(fc) ---> 66 df, logs = process_ppi_cid(ppi, pid_cla, cla_cid) 67 ppictx.logging_ppi_cid(df, logs) File ~/code/someProject/ppi-context/ppictx/routine.py:22, in process_ppi_cid(ppi, pid_cla, cla_cid) 18 # Check if publications exist 19 if ids != '-': 20 21 # For each publication reporting this interaction ---> 22 pids = ppictx.split_ids(ids) 23 for pid in pids: 24 log[pid] = {} File ~/code/someProject/ppi-context/ppictx/utils.py:13, in split_ids(ids) 12 def split_ids(ids): ---> 13 pids = [j.lstrip('pubmed:') for j in ids.split('|')] 14 return pids AttributeError: 'float' object has no attribute 'split'
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when i run
it raise Exception
The text was updated successfully, but these errors were encountered: