From 8929d9afb69a4617bcaaa7c72aab8d73b792d174 Mon Sep 17 00:00:00 2001 From: KenjiKamimoto-wustl122 Date: Tue, 11 Jan 2022 15:15:27 -0600 Subject: [PATCH] update notebook --- .../Network_analysis_with_Seurat_data-checkpoint.ipynb | 2 +- docs/notebooks/04_Network_analysis/.log | 6 ++++++ .../Network_analysis_with_Seurat_data.ipynb | 4 ++-- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/docs/notebooks/04_Network_analysis/.ipynb_checkpoints/Network_analysis_with_Seurat_data-checkpoint.ipynb b/docs/notebooks/04_Network_analysis/.ipynb_checkpoints/Network_analysis_with_Seurat_data-checkpoint.ipynb index 447c858..d2da8de 100644 --- a/docs/notebooks/04_Network_analysis/.ipynb_checkpoints/Network_analysis_with_Seurat_data-checkpoint.ipynb +++ b/docs/notebooks/04_Network_analysis/.ipynb_checkpoints/Network_analysis_with_Seurat_data-checkpoint.ipynb @@ -1503,7 +1503,7 @@ "metadata": {}, "outputs": [], "source": [ - "links.filter_links(p=0.001, weight=\"coef_abs\", thread_number=2000)" + "links.filter_links(p=0.001, weight=\"coef_abs\", threshold_number=2000)" ] }, { diff --git a/docs/notebooks/04_Network_analysis/.log b/docs/notebooks/04_Network_analysis/.log index 5bcf8b1..834dbee 100644 --- a/docs/notebooks/04_Network_analysis/.log +++ b/docs/notebooks/04_Network_analysis/.log @@ -270523,3 +270523,9 @@ label 422: 2022-01-11 15:11:37,022 [14428] DEBUG root:197: [JupyterRequire] Configuration requested: {'paths': {}, 'shim': None} 2022-01-11 15:11:37,023 [14428] INFO root:271: [JupyterRequire] Comms have been successfully initialized. 2022-01-11 15:11:37,023 [14428] DEBUG root:97: [JupyterRequire] Registering comm targets. +2022-01-11 15:14:41,523 [14803] DEBUG root:75: [JupyterRequire] Loading Jupyter Require extension. +2022-01-11 15:14:41,523 [14803] DEBUG root:93: [JupyterRequire] Initializing comms. +2022-01-11 15:14:41,523 [14803] INFO root:247: [JupyterRequire] Initializing comms. +2022-01-11 15:14:41,526 [14803] DEBUG root:197: [JupyterRequire] Configuration requested: {'paths': {}, 'shim': None} +2022-01-11 15:14:41,526 [14803] INFO root:271: [JupyterRequire] Comms have been successfully initialized. +2022-01-11 15:14:41,526 [14803] DEBUG root:97: [JupyterRequire] Registering comm targets. diff --git a/docs/notebooks/04_Network_analysis/Network_analysis_with_Seurat_data.ipynb b/docs/notebooks/04_Network_analysis/Network_analysis_with_Seurat_data.ipynb index 447c858..7727282 100644 --- a/docs/notebooks/04_Network_analysis/Network_analysis_with_Seurat_data.ipynb +++ b/docs/notebooks/04_Network_analysis/Network_analysis_with_Seurat_data.ipynb @@ -1503,7 +1503,7 @@ "metadata": {}, "outputs": [], "source": [ - "links.filter_links(p=0.001, weight=\"coef_abs\", thread_number=2000)" + "links.filter_links(p=0.001, weight=\"coef_abs\", threshold_number=2000)" ] }, { @@ -3200,7 +3200,7 @@ ], "metadata": { "finalized": { - "timestamp": 1623269400628, + "timestamp": 1641935706786, "trusted": false }, "kernelspec": {