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July 23-26, 2019

Texas Advanced Computing Center

Drawing

The key to scientific discovery in the cloud is an orchestrated, reproducible scientific workflow that combines data from many experimental sources. This reproducibility not only enhances your productivity but also allows others to validate your data and discover the story inside the data. The Science in the Cloud Institute is designed to teach you the tools required to help you explore and find that story, and create a reproducible environment that allows others to explore and validate your findings. In this Institute, we introduce virtualization tools such as Virtual Machines, container technologies such as Docker and Singularity, and orchestration tools such as Kubernetes. Led by TACC's expert domain scientists and developers, we show you hands-on how to use these tools in conjunction with scientific analysis software to develop a production-ready workflow that can easily be applied to your science while also introducing you to the latest hardware that powers TACC's Cloud platform. By the end of this institute, you will be ready to take your science to the cloud.

Participants should bring their laptops and plan to participate actively. Laptops will require a terminal application for accessing compute resources.

Instructors:

Click here for more information about the course instructors.

Agenda

Tuesday

Time Topic
9:00 - 10:15 Cloud Concepts
10:15 - 10:30 Break
10:30 - 11:45 VM Setup
11:45 - 13:00 Lunch and Small Group Discussions
13:00 - 14:15 Docker Containers
14:15 - 14:30 Break
14:30 - 16:00 Docker Compose

Wednesday

Time Topic
9:00 - 10:15 Reproducibility
10:15 - 10:30 Break
10:30 - 11:45 Docker in the Cloud
11:45 - 13:00 Lunch
13:00 - 14:15 Jupyter
14:15 - 14:30 Break
14:30 - 16:00 Pandas

Thursday

Time Topic
9:00 - 10:15 Human SNP Analysis Part 1
10:15 - 10:30 Break
10:30 - 11:45 Human SNP Analysis Part 2
11:45 - 13:00 Lunch
13:00 - 14:15 Title TBD
14:15 - 14:30 Break
14:30 - 16:00 Title TBD

Friday

Time Topic
9:00 - 10:15 Kubernetes
10:15 - 10:30 Break
10:30 - 11:45 TACC as Cloud
11:45 - 13:00 Lunch
13:00 - 14:15 TACC Tour
14:15 - 14:30 Break
14:30 - 16:00 One-on-one by request